RnoINT0108921 @ rn6
Intron Retention
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2332338-2332647:-
Coord C1 exon
chr14:2332547-2332647
Coord A exon
chr14:2332446-2332546
Coord C2 exon
chr14:2332338-2332445
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CCACTCCTTCTTGGGATCAGGAA
3' ss Score
5.7
Exon sequences
Seq C1 exon
AGCCTGAATATCTACCAGAACCTGAACCGGCGGCAGCATGAACATGTGATCCACCTCATGGACATCGCCATCATTGCCACTGACCTGGCCCTCTACTTCAA
Seq A exon
GTAAGAATGCGTCAGAGGCTGGAGGTATGAGTAGAGCCCTCAGTAGACACAGATAAACATGACCAGCCTGTCACCTACTCCCCACTCCTTCTTGGGATCAG
Seq C2 exon
GAAGAGAACCATGTTCCAGAAGATTGTGGATGAATCTAAGAACTATGAAGATAAGAAGAGCTGGGTTGAGTACTTGTCCCTAGAGACCACACGAAAGGAGATCGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065:ENSRNOT00000000077:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(13.3=100)
A:
NA
C2:
PF0023314=PDEase_I=FE(14.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGAATATCTACCAGAACCTGA
R:
CGATCTCCTTTCGTGTGGTCT
Band lengths:
205-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]