HsaINT1026507 @ hg38
Intron Retention
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr10:93663028-93666010:+
Coord C1 exon
chr10:93663028-93663178
Coord A exon
chr10:93663179-93665359
Coord C2 exon
chr10:93665360-93666010
Length
2181 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GCTTTCCTTGATTTTACTAGCTG
3' ss Score
4.95
Exon sequences
Seq C1 exon
GAGTTCTCACGGTTTCACAAAGAAATCACACCTATGCTGAGTGGTCTTCAGAATAACAGAGTAGAATGGAAATCACTAGCTGATGAGTATGATGCAAAGATGAAGGTCATTGAAGAGGAGGCAAAAAAGCAAGAAGGAGGAGCCGAAAAAG
Seq A exon
GTTAGATGGGCTCTGTTTTTGCTCCCTGTAATGTAGCCAGAAGCTAGGCTGAGCTTAATGGCATGTGACAAAGCCATAAAGAGTCACCACAAACAGAAAACCTGCTTTACTGGTGCAGACTGATCATTTTAACAGGCCGATTAGTGGTTTTCAGGTCCCCCTGGCCCTGCCACAGACAACATCTTATGTATAACTCCAGATCGAATTGACCGGTCCAGTTGAAGTAGAGGTTGGAGCTAGGCTTCTTCATCTTGCTAGAAGGTGGCTCCTCTGCAGAACACTGGGTGCTTAGGGATAATATGTAAACTACAGAATCTGGGGGATTAGAGTTAGGTGAGAAAAAAGTTTTTGTCCCAACATTATGCATTAGCTGTGAGACCTTGGGCAGCTTGCTTAACCTCGCTGAGTTTAATATTCTTCTCCATGTAATGAGGTGGTTTTACAGATCTTCAGCTTAAGGAAGCCCTACATGTAGAGTAAGGCTGAAATTGCCGGTCTCCCAAATGTCTCATTGGGAGATGTTTTTCTGGCATGAGATTCCTGTGCCATTTTTTTTCTGGCATGAAATTTCTATTCCTAAAGTCACTTTGTCAAGTTTAATGTTGTTTTTGGATTCTTAAAATGCTTAGGATTAACTATTAGTTCATCAGATGGCCCAAACATCATTTTGAAAGTGGAATGCTAATTTCTGTCTTGAAAGTTTATCACTCTGAAGGTTTTGTAAGCAATTGTTATTGCTTAACAAAGAAATCATCTCTATGTGGAAAGGCCCTGACATGTTCCTTTTAGGTGGCTCTATTGCATTTAGTGAAATTTTAAATAATTCATAGGAGAAAATATTTTTCTTAACAAAGTTAAGGATGTCCTTCAGAATAAAAGCAGGAGTTTTTGACTCCTTGATATCCATTCACTTATGTATTTATCAGATGTCTTCTCTGTATAAAGCCCGGTGTTAGGCAGGCCCTGGGGAAAGATGGGATCCTTTATCTTGAACAATTTACCATTTGGTGGGGGAACTAAACATTGTGAACCAATGCACAATTAACGATCTCGAAGAAGGCACTAGTGTGCACATGGGCCATGGAGAAGGCTTTCCTGAAGAATGCTTACGCTAACCACAGAAAGCAGGCATTGGGGAGGAAGAGTAAGAAAATATGTACAAAGGCTTGGAGTAGGAATAAGCTTGGTGCAATTGAAAAATTTTTAAGCTGATATAGCTGGAGTCTAGAGAGTAAAGAGTGCGAAGTACATATGAAGCTGGTAGTGCAGGTAGCTGCCAGATACTGTATTGCCTTGAAGGTGGGCTAAAAATGTTCATGGGTCATTTGAGAGATTTAAGGTAAGATATGATTTGCATTTCAAAACAATAAGTGATTTTTACCAAGCAAGTGAAAAGTGAGGGTATTTCTTAGTACTATTAGATTTAACCTTTATCTCAACTTTATTATGAAGAGATGATCAGGTCCTTTAAGTGACATTGGATATGGATCTGTATTTTATTTGCACAAAAATTTACTTCTGAGTTTTTTTGCTACTACATAGAGAATTCTTTGTGGACTAAGATCATTATTTTCTATCACCAGGCATGGAGCTTTGTGCATCAAGCTCAGATTTCCAGACTGCATTGTCTCAGTGAGAAACTAAGATGTTAACTGGCCAACCATTGATCAGATTCTGTTTTTTATTTATTTAATTTATTTTTTTGAGACGGAGTCTCACTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCATGATCTCAGTTCATTGCAACCTGTGCCTCCCAGATTCAAGCGATTCTCCCACCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCACCACACTCAGCTAATTTTTATATTTTTAGTAGAGACAGGGTTTCACCATATTGACCAGGCTGGTCTTGCACTCCTAATCTCAAGGGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCAGGAGCCACTGCACCTAACCCAGATTTTATTTTTTGAATGGACCAACTCTGAATATTAATTCAAGTTTTTACATGGTCAAACCCACAGTACTTGCTAGGTTAAAATGACTAATTAGTCTACAAAGTTGACACTACTATCATGGGAATGTTAGAATAAAAACACTGTATATCCACTAACTCCTAATAATATTGCTTTCCTTGATTTTACTAG
Seq C2 exon
CTGCTGAAGATTCAGGAGGTGGTGATGACAAAAAGTCCAAAACATGTTTAATGTTGTAATATTATCTAACTGGTCTAAACTTCAAATATCATTTTACCTTTGAAGAAAACCAGAAAACATTCAAAAGAACTTCAACAAATCATCACGTAACAGGATCTTCAGAAAAACTACCCTGTGACTATGAAGAAAATATATATTGCTAGCCCAAAAATCCCAGGGGCAAAATAAAGTTCAACAAAAGTGCAAAATATGACAAAAATAGGTACATTTTTGGTGCCAATTTATTTTAAATTAAAAAATATGCAATCCTGAAACTAGTCACAAATTCTTTTTTAAAACATTAATTGTATTTATTTGCTAAGGCTGCTATAACAAAGTACCACAGACTGGGTGCTTAACCAATAGAAATGTATTTTCTCAAAGTCCTGGGGGCTGGAAGTTCAAGATCAAGGAGTTGGCAGGGTTGGTTTCTTGGGAGGCCTCTCAACTTGGTTTGCAGATGGCCATCTTCTCCCTGTGTCTTCACATGGTCTTCCCTCTGTGTGTCTGTGTCCTAATCTCCTTTTCTTATAAGGACTCCAGTAGGACTGGATTAGGGCCTACCCATGTGACCTCATTTTAGTCTTAATTACCTCGTTAATGGCCTTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464:ENST00000371447:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.275 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(7.6=37.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains