HsaINT1026509 @ hg38
Intron Retention
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr10:93621932-93625649:+
Coord C1 exon
chr10:93621932-93622072
Coord A exon
chr10:93622073-93625574
Coord C2 exon
chr10:93625575-93625649
Length
3502 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCTT
5' ss Score
3.87
3' ss Seq
TTAAATCTGATTGCCTCCAGGAA
3' ss Score
8.11
Exon sequences
Seq C1 exon
ATCCTTATGTGGTCAGCCAATAAAGTATTTGAAGAACTCACAGATGTTGAGCGACAGTTTCACAAAGCGCTCTACACGGTTAGATCATATCTGAACTGTGAACGATACTCCATTGGACTGCTGGACATGACCAAGGAGAAG
Seq A exon
GTTCTTATTATTCTACACATTTTGTCTCATCTCACATCGCCTATATAACACACACCACAGGAAATGTGATCCTTAAAAAACAGATACACTATGTAAATAATTAGTCATGATTGATGACAAGAACAGAGGTAAAAGTGTGTGTCTTGGAGCAAAAAAGATGTAGGCTTGAATCTTGGTTTTTCCACTTCCTAGTAATATGGGTTTTCAGCAAGTCTGTTTTTTTTTTACATTAATTAATAGACTATTTTTAGAGTAGTATTGACAGAAAAATTGATTATAAAGTACGGAGTTTCCTCTTCCCTCCCAATCTCCTCTCCCAGTTTCCCTGTTATTAATATCTTGCATTAGTGTGGTGTGATGAATCAATATTGATATATTATTATTAACTAAAGTCCATAGTTTACATGAGGGTTCATCCTTTGTGCAGTTCTCTGGGTTTTGACAAATGTGTAATGTCATATATCTGCTACTACAGTATCAGACAGACTACTTTCAGTGCCTCAAAGCCCTCTGTGCTTCACATATTCAACCTTTCCTCACCCCTTCCAAACTCCTGGTAGCCACAGGTTTTTTTTTTGTTTTTTTTTTTGTTGTTTTTTTTTTTTTGCTGTTTCTATAGTTTTTGCCTTTTCCAGAATGCCATATAGTTGGAATCATACAGTATGTAGCTTTTCAGACTGGCTTTTCACTTTGAAATATGCATTTAAGTTTCCTCCATGTCTTTTCATGACTCAATAGCTAATTTCTTTTTATCACTGAATAATATTCCACTGTATGGCAGGTTTGTGTATCCATTCACCTGTTGAAGGGTATCTTGGTTGCTTCTAATATTTAGTGATTGTGAATAAAGCTGCTATAACCATTGTAGGTAGGTTTATGTGTGTCTACATGTTTTCAACTCAATTGGGTAAATACCGAATAGGGCAATTGCTGGATTATACTGTAAGACAAATTGATCTTTGTAAGAAACTGGCAGACTGTCTTCCAAAGTGACTTTACTGTTTTGCATGTCTACCAGATGCACTTTCTCACCAGCAGTTGTTAATGTCAGTATTTTGGGTATTAGCAGTTGCTGATGTTAGTATTTGGGGTATCAGTTGTGGTATCTCATTGTTGTTTTAATTTTCAGTTCCCCAATGACATATGATGTTGAGCATCTTCTCATATGTTTACTTGCCATCTGTATATCTTCTTAGAGAGATAGCTGCTCAGATTTTTTGCCCACATTTTTTTATGTTGTTTTCTTATCATTCAATTGTAAGAGTTATTTGTATATTATGGGTCCAAGTCCTTTACCAAATATGTGATTTGCAAATACTTTCTCCCAGTCTGTGGCTTATCTTTTCATTCTCTTAACAGTGTCTGCTGCAGAGCAGAAGGTTTTAATTTTAATGAAGTCCAATTTTTCTATATTTTTTCTTTCATGGATTGTGCTTTTGGTGCTGTATCTATGAAGCCTCATCAAACCCAAGTTCACCTAGATCTTCTATGTCATCTCCTAGAATTTTTATACTTTTGTGTTTTACATTTAGGTGTATAATCCATTTTGAGTTATTTTTTGTGAAAGGTACAAGTTCTGTTTCTAGATTCACTTTTTTTACATGTAGATGTTCAGTTGTTCCAACAAAATTTGTTGAAAAGACTATCCTTTGTTCATTGCCTTTGCGCCTTTGTCCAAGTTAACTATATTTGTAAGGGTCTATTTCTGGGTTCTCTATTTTGTTTCATTGATTCATTTGTCCATTCTTTCACTAATACCACACTGTCTTGATTATTGCAGCTTCATGGCAAATCTTAAGTCAGGTAGTGTCAGCTTTTTGATTTTGTTCTTCTTGTCAGCAAGTCTTTTAACCTACCTGATTCTTGGCTTCTTCATCTGTAAAATGAGGACATCTCTCTTATCAATTGTGAGAATTAGAGATTTTATATATTTTTTTATATATATAAACACTATATGTACATAGTGTCTAGAATTTACACAGTAGGTGGATAATCAATATTATCTTTACCAACTTTAGGTTTTTGTATTCTAAAAAAATTTAATTAAAGTAGAAATATTGAAACATGTAATATTATTCACAATATAATGCCCTTGTGTCATCTTCTTTAATTCTGTTGCTACCCTTCTAGTTCAAAATAACTAACGATACCATATTATTTATATATTTTTTCTTTTGTTTTCTTTCCTTTTTTTGAGACTCTGTCTTGGTCTGTCACCAGGCTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCAGCCTCCCAGGTTCAAGCGATTCTCATGCCTCAGTAGCTGGGATTATAGGCCTGTACCACCACGTCCACTGATTTTCGGTATTTTAGTAGAGACAGGATTTCGCCACGTTGGCCAGACTGGTCTCGAACTCCTGTCCTCAAGTGATCCGCTCGCCTTGGCCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTTATTTATATTTCTTCATATTCATGTGATTGGAAGTTATTTTTTCAGAGTAATTGTTCTAAGTGGATAAACATAGGATGAAGCACTAGGAGAGCTGGGTTCTGATCTTGGTTCTGGGACTTTGTAGCTGAGTATGTTGGTTAGGATTCTTTTGGCTATAAGAAACATCAGACACAGCTAAAAGCATCTCTAACAATATGATATTTATTCTCCTACTTAACAAGGTAGGGCAGCGCTAGTACTGGTTGATTCAGAGATCAGTGCAGTCATTAAAGTCCAGGTGCTTTCTCTTTCTTCCTGGCAAGGTCTCTGCTACCTGCAGCGTGCTGGTGAGGCCTCCTCTTATGGTGGAAAGATGGCTGTTGCAGCTCAAATCATTGGCACATAGGCATGACACAACTGGGAGGCATTTTCTCCAAATGTCACTCTCATCAGCTTTTATCTGAGGAATACCTTTTGCCAGTAGTCCCTCAGCAGACTTCTCCCCCTTCTTCAATGTCCAGATCTGGGCCACATACCTGCCCTTAAACTGATCTAGGCACCTCATGTAGACCACTCATGGGCTGTGGTCTGATGGAAAATTACCACCTGATACTCAAATCGCATCAGGTTATGCTAGCAAGGAAAAGACAGAGAATGAATGTTGGGTAAAGCAACCAACATTTTGCCACTCTGTGTGACCTTGGCCAAGCCTTTTACCAGATTTAGCTTAATTGTCTATGAAAGAATTGCTATACATTGAGTATTTTGAACTATGTGCCAGGGTAGATGTTACATATGTATTATTCATTTAATCCTCACAACAATTCTTTAGTACAAATTCTATTGTTATCCCTATTTTACAGATGTAAAAGGTTAAGTAACATGTTAACAGTCAAAAATTCCTAACCAGTATTGCTGGGAATTGTAGATCTTTCAGCACTAAAATTCCAGAATTACGTAGATTAACATAAAATATACAAACACATAAAATTCATATAAGATATGGTAGGTCATGGAACAGTGTGTTTAATGATACTTAAATCTGATTGCCTCCAG
Seq C2 exon
GAATTCTACGATGAATGGCCAATCAAGCTTGGAGAAGTAGAGCCTTATAAAGGTCCAAAGACACCTGATGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464:ENST00000371447:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=PU(18.0=68.1)
A:
NA
C2:
PF0159021=GAF=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains