HsaINT1026618 @ hg38
Intron Retention
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr1:156902188-156904027:+
Coord C1 exon
chr1:156902188-156902285
Coord A exon
chr1:156902286-156903917
Coord C2 exon
chr1:156903918-156904027
Length
1632 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTGCGCCGGTCTTGCTGCAGGCC
3' ss Score
9.56
Exon sequences
Seq C1 exon
GCTTCATATCCTGAACGCTGGGATCCCCCAGGACATTCCCTGGCCCCCAGGCCCCAGGTCCCAGGCCCCAGGGCTGAGCTGTGGGCAGGCCCCACCTG
Seq A exon
GTGAGTTACTTGGGGACTGAGGATGGATAGGAGGAAGCACAGAGGAGGCTAGAGGCTGAGATTCGCCCTGCGGGAAGTGTGATGGGGCATGCGGCTGGGCTGCACTGGAGGGGTGGGTAGACGCTGGCACTGGGAGGATAGGTGGGCCAGCATCCTGGATGAAAGGCTGGAGATTTGGCTGCTGGAGGGTTAAAGGTGAAGGAGGAACATGGGCGGCTGAGATGGGGTTAATTTAGGAGCCTAGACCTGGAGGGAAGGAGCGGCTGCCCTTCTTGGGGCTGAGAGTGGCTTTGGGGACCCTGGGAGTGTGTGGGTGTGGGGTGTGGGGTAGGGCCAGGCAGCAACATTCCAGAGATACTCAGGGGGGTAAGGGGCCAGCAACCGCGACCTTTCTCTCGTCTCAGAAAAATTATAAGCAGATGTGGGCGCCTCGGGGAGGCGTAGAGCAGGGAGCCAGAGCAAGTTTTGGGAACACGGAATGCAGACCCTGAAGCCGGCTGCGGGGATGGGCACTGCGGTAACTCATCCTCTCCTGAGCTCAGGAGCTGAGGCAGCAGAGCCGTCTGAAGTGCTGGGAGCCAGGGGTGGTGGGGATGGAGAGGACCCCATTTCCGAATGGCTGACAGGGCAGTCTGAGGGAGGCGGGAGCTTTTCCTTAAATGCAAGGCCAGGTTGGTGACCTCTTCAGGTGATGGCACCTAGAGTTGGGTGTTGTGGTGTGCTGGCTAAGGTGTCACAACTGACTCTGGGAGGGAGACTGGCCTTGGGTTTTAGTGTTTGCTAGTTTCTCTGGTGTCAATAACCCCCCATGCCTGATTTCAAGCTACTCACGTGACATCACTGAACATGTTGCTAGGAAGAGATGCATACAATTGGCTCTCTGGGCCCGTATGAGGTGGTTCCAGCACACCACTGGTTGGGAGGTCACCTGGACCCAGCCCCACTCCCACCATATAGAGCAGGAAACCCCTGACAGCGTTTCATCAGGCTGGTTTTGGCTTCTGCCTGCATATGTCCAGTGACAGGGAACTCACCACCTGAGGTAGCCGATTCTATTCCTGAGCCGCTCTGACTGTTGGAAAGTTCTTCCTCTGACTGAGCCCAAGGCTGAGTCCCTCATCACTTCCCCTCACTGGTTCCAGTCTCACACCTTGGTACAAATATCAAAGTGCCCTGGGTAGGGCCTGGGCTGGGGGCTGGGGATTCAGAGATGAAACGCACTGGGTCCCTGCCTCTGGAGGTCATGGTCAGGGAGCAGGCACTGGAACAGTGGGGTGGGGGTGAATGATACTGGGACCCCCAGAAGGAATGAGTGGGATCATCTGCCAATGAGCATCAGGAAGTGGAGGAGGGAAGGGGTGGCACCTGAACTAGACCTTGAAAGATGGGAACTCCAGGTGAAGAATGAGACGTGAGGGTGTCTAAGCAAACTATGAGCAAAGACCGGAGGCGTGGAAGTGACTGCAGTTCAGGAGTGAGGTGTAGGGGAGCTGGAGCTCAGAGCAAGGGGCCAGAGGACACGGGGCCGCAGTCTGGTCTCTTCTGCATGCCCACGGCTCAGATCTCTGCAGACAGGTCCTCCAGGCTGCTGGCTGCAGCGCCACTGCCCACTCTGCGCCGGTCTTGCTGCAG
Seq C2 exon
GCCTCTGCAATGTCACCGCCTCTGTGTCCCCTCCTTCTCCTGGCTGTGGGCCTGCGGCTGGCTGGAACTCTCAACCCCAGTGATCCCAATACCTGCAGCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800:ENST00000338302:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(18.0=26.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCATATCCTGAACGCTGGG
R:
CTTTCCCAGAAGCTGCAGGTA
Band lengths:
208-1840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains