RnoINT0109564 @ rn6
Intron Retention
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187125345-187127129:-
Coord C1 exon
chr2:187127059-187127129
Coord A exon
chr2:187125507-187127058
Coord C2 exon
chr2:187125345-187125506
Length
1552 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTGCTTGGATCTTTGCAGATG
3' ss Score
8.65
Exon sequences
Seq C1 exon
GATCTAGGTCCTGAGCACTGGAATTCCCCAGAACAGCATCTGGCTTCCCAGACCCATGCTGGCCACCACTG
Seq A exon
GTGAGTCACTTGGTTGACAGAAGAGCGAAGTCTGAGAAGTCCAGAGCCAGCCGGGGGTCCTAGGGGAGGGGCGGGGTGCTGTGGCTCTGGTCAGTGAGGGAGTAGGGAAGAGGCTCACTCTGGGAGGTAGTGACATGGAGTGGAGAGGACCAAGGGGGAAATTCAAGTGTTGGGGTTCAAGGTAGGGGGGCTGGACCACAGCAGGGAGTTGGGGTTCAGTTAGGATGTCTGTGTTAATTTGAGAAGGCACCCTGTCAGAGCTGATAGAATCACGATCTGCCAGAGTATGTGGGTGGGTGGGGGGGGCGGGGTGGGGCTGCAACAAGCATTCCAGAGATCCTCAGGGGTGTAAGGGGCTAGCAAGTGCGACCTCTTGGAAAAATTACAAGCAGATGTGGGCATCTCTGGAGAGTGGAGCGAGAAGCCTGGGCAAGTCTAAGAAACTCCAAGCAGAACACAGGAACACAGAGGCGAAGGGGTGGCCTCTAGCCCTCAGCTTTTTCTGAGCCTTGGAGTTCAGAGAAAAACTCATTTCATCCGGAGGCCTGACCCTCTCCCCACCCGATGAATGAGGCCTGGGTGTGGAGCTGGTGAGGGGCCAGTTTCCTAGAGCTGTGAGAGAAACATGGAAATGGCCCCCTTGGAGCACACCAGTGGCTGTGTGGGTCACTCAGTTGCGGCCCCACATATGTAGTCCCCCATAGCAGGAAGCTTCTGCACTTCATCAGTCGCTTTGGCTCGTGTCTGCCTGCATACAGCAATGAACGCTTGCTCTCAGTGGCATCTGACCCGGAACTGTCCATTGGAGAGTTCTTTTGAACTGAGCCCATGCTGGCTTCTCTTAGAACCTCCTTCATTGGTCCCAGCTTCGCACTGTGGTGTCCTGAATATTTGCTAGGCTAAGGGGTGCTCAGGGGACAAGAGAAGTTGATACGTAGTGTTAGGAGACTCTGAAGAGAGATGAACGTGGTGCCTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGAGTTGTCAGGGAGCAGACAGAAAAGGAAGGTGGCACTCAAGCCAGGCCTGAGGCACAGAACTCTAGGAATAATGAAAGCTGGGGTCAGTGTGTTAGCAAACTGAGCTGAGACCTGGTGACACAGAAGTGCGCTAGGAGCACTGTTCTAGGGAAGCTGGAGCACTGTTCTAGGGAAGCTGGAGCACTGTTCTAGGGAAACTGGAGCACTGTTCTAGGGAAGCTGGAGCACTGTTCTAGGGAAACTGGAGCACTGTTCTAGGGAAACTGGAGCACTGTTCTAGGGAAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTAGAGTACTGTTCTGGGGTAACTGGAGCACTGTTCTGGGGGAGCTGGAGGACTCCCATGCTGAGGCCCTGGCTGCCCTATACACCCCTCACACCTTGGTGTGACCAGAGGACTATGGAGGCAATGGGCTGGTTTCTCCAGCAAGCTTCCTGCTTGGATCTTTGCAG
Seq C2 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTCTGTTGTTGGGTGCCCTGTGGCAGGCTTGTGCAATGCCACTCTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGGCTGGAACACTCAACTCCAATGATCCCAATGTCTGTACCTTCTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243:ENSRNOT00000019502:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.2=28.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTAGGTCCTGAGCACTGGA
R:
TCCCAGAAGGTACAGACATTGG
Band lengths:
230-1782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]