MmuINT1026488 @ mm10
Intron Retention
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87760224-87762281:-
Coord C1 exon
chr3:87762212-87762281
Coord A exon
chr3:87760386-87762211
Coord C2 exon
chr3:87760224-87760385
Length
1826 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCTGCTTGAATCTTTGCAGATG
3' ss Score
9.11
Exon sequences
Seq C1 exon
AATCTAGATCTTGAGCACTGGGATCCACAGAACATCACCTGGCTGCCTAGGCCCATGCTGGCCATCACTG
Seq A exon
GTGAGTCACTTGGTTGAGTGAGAGAAGCCTAGAGTCAGCAGGGGGGTGGGGAGGTCCTGGGGGGTGCAGTGGCTCTGGTCGGTGAGTGAGTTGGGGAGAGGTCCACTCTGGGAGGCAGTGACATAGAATAAGGAGGACCAAGGGAAAAGTGTTGGGGTGAAAGGTGGGGCTGGACCACAGCAGGGAGTTGGGGTTCAGTTAGGGAGTCTGTGTTAATCTGAGAAGGAGGCACGCTATCTGAGCTGAGAGAGTCACAATCTGCCAGAATAAGTGGGTGGGTGGGGGGCCGGGGTGGGGCTGCAGCAAGCATTCCAGAGATACTCAGGGGTGTAAGGGGCCAGCAACTGCGACCTCTCGGAGAAATTATAAGCAGATGTGGGCATCTCTGGAGAGCCGAGCCCGGAGCCCGGGCAAGTTTAAGAAACTCCAAGCAGAAAACAGGAACCCAGCGGCAGAGGGGTGGCCTCTAGCCCTCAACCTTTCCTGAGCCTTGGCGTTCAGAGGAAAACTCATCCCATCCAGGGCCCTGACTCACTCTCTCCCCACCCTCTGGGTGAGGCCGAGGTGTGGAGCTGGTGAGGGGCCAGTTTCCTAGCACTGTGAGAAAAACGTGGACATTGCCCCCTTGGCGCGCACCAGTGGCTGTGTGGTCACCTAGCTGTGGCCTCACGCATGCAGTCCCCCACGGCAGTAACCTCCTGTGCTTCAGCAGTAGCTTTGGCTCTTGTCTGCCTACATACAGCAATGGAAGCTTGCTCTCAGTGGCATCTGATACTGAACTGTCCATCGGAAAGTTCTGGACCGAGCCCACGCTGGCTTCCCTGAGAACCTCCTTCATTGGTCCCAGCTTTTGCACTGTGGTGTCCTGCTGTTTGTTAGGCTAGGGGGTGTTCAGGGGACAAGAGAAGTGGATATGTAGTGTTAGGAGACTTGTAAGAGAGATGAATGTGGTGCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTGGGAGATGGAGTTGTCAGGGAGCAGACAGAAAAGGAAGGTGGCACTCAAGCCAGGCCTGAGGCACAGAACTCTAGGAATAATGAGAGCTGGGGTCAGTGTGTTAGCAAACTGAGCTGAGACCTGGAGCCATGGAAGAACGCTAGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAACACTGTTCTGGGGGAGCTGGAGCATTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAACACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGTAGCACTGTTCTGGGGGAGCTGGAACACTGTTCTGGGGGAGCTGGAGCATTGTTCTGGGAGAGCTGGAGCACTGTTCTGAGAGAGCTGGAGTACTGTTCTGGGGGAGCTGGAGCACTGTTCTGGGAGAGCTGGAGCACTACTCTGGGGAAGCTGGAGCACTGCTCTGGGGAAGTTGGAGCATTGTTCTGGGGGAGCTGGAGCACTGCTCTGGGTAAACTGGAACACTGTTCTGGGTTCTGGGGAAGCTAGAGCCCTGGACCAAAGGACTAGGGAGGCAGTGGGCTGATTTCTTCAGCATGCTTCCTGCTTGAATCTTTGCAG
Seq C2 exon
ATGTGTCCTTCCGGCTGCTGGCTGCAGTGCTGTTTTGTTACCGTGTGCCCTATCGCAGGCCTCTGCAATGCCACTTTGTCCCCTCCTCCTCCTGGCCCTAGGCCTGCGTCTGACTGGGACACTCAACTCCAATGATCCCAATGTCTGTACCTTTTGGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073:ENSMUST00000172621:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(12.3=28.1)
Main Skipping Isoform:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTAGATCTTGAGCACTGGGA
R:
TTCCCAAAAGGTACAGACATTGGG
Band lengths:
230-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types