HsaINT1026775 @ hg38
Intron Retention
Gene
ENSG00000112511 | PHF1
Description
PHD finger protein 1 [Source:HGNC Symbol;Acc:HGNC:8919]
Coordinates
chr6:33415590-33416453:+
Coord C1 exon
chr6:33415590-33415670
Coord A exon
chr6:33415671-33415809
Coord C2 exon
chr6:33415810-33416453
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CAATTGCCTTCTCTCCCTAGGTC
3' ss Score
11.77
Exon sequences
Seq C1 exon
CAGCCCCATCCGGATGTTTGCTTCCTTCCACCCTTCTGCCAGCACCGCAGGGACCTCTGGGGACAGTGGACCCCCAGACAG
Seq A exon
GTGAGATTCTGTCTTCTATTACCAGTGATGCTCTTCTTCCCCTCTATGTGCTCAAGGCTCTTAGTCTCTAACACTGTTTCTCTGATTCACATGTGCTCTCCATTTCTGCCCATTTCTTACAATTGCCTTCTCTCCCTAG
Seq C2 exon
GTCACCCCTGGAACTTCACATTGGTTTCCCCACAGACATCCCTAAAAGTGCCCCCCACTCGATGACTGCCTCATCTTCCTCAGTTTCATCCCCATCCCCAGGTCTTCCTAGACGCTCAGCACCCCCTTCTCCCCTGTGCCGTAGTTTGTCTCCTGGGACTGGGGGAGGAGTCCGAGGTGGGGTTGGTTACCTGTCCCGAGGGGACCCTGTCCGGGTCCTTGCTCGGAGAGTACGGCCTGATGGCTCTGTGCAGTACCTGGTTGAGTGGGGAGGAGGGGGCATCTTCTGAACAGCCTGCCTCTGCCCAGCTCCCCATTCACACACACCGGCACTTTCATACCCTGACCTCTGACCTCACCTACAGCTGGGATGTACCTGGAGAGATAGGGGGTAGTTCTCCCTACTGCCCAGGCTGGAATCCAAGAGTGGGGAGTGGGGAAGAGGCCCTCTTCTCTACCCTCCTTCATGATTCCTGACCCCTCCCATCCTTCCCATTTCCTTTGATGTTATTTTGTTACAGCTTTTTAAATATTTTTTAAAATTATTTAACCCCTGGGGGCAGAGACTGAGGAGGGAGGATGATAAGGGATCCCGGACTCTGTATGATTGAAATAAAGAGAAATAAACAAATCTAGCAGCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112511:ENST00000374512:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF140611=Mtf2_C=WD(100=43.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCATCCGGATGTTTGCTTC
R:
CCCCAGTCCCAGGAGACAAA
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains