HsaINT1028215 @ hg38
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31145789-31148675:-
Coord C1 exon
chr16:31148395-31148675
Coord A exon
chr16:31145956-31148394
Coord C2 exon
chr16:31145789-31145955
Length
2439 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTCTCTGGTTCTGCCTCCAGATC
3' ss Score
11.27
Exon sequences
Seq C1 exon
GAATGGGACGCTGGAGCCCGCGGCCGAGTGGTCGGTACTGCTGGGCGTGCACTCCCAGGACGGGCCCCTGGACGGCGCGCACACCCGCGCAGTGGCCGCCATCGTGGTGCCGGCCAACTACAGCCAAGTGGAGCTGGGCGCCGACCTGGCCCTGCTGCGCCTGGCCTCACCCGCCAGCCTGGGCCCCGCCGTGTGGCCTGTCTGCCTGCCCCGCGCCTCACACCGCTTCGTGCACGGCACCGCCTGCTGGGCCACCGGCTGGGGAGACGTCCAGGAGGCAG
Seq A exon
GTGAGTGGGACGGGACAAGAGGGGAGGGCCTCGGGGAGGTGGGGCTTCGAGAGGTGAGGTTCCTAGGGCGGGGCCTCAGGAGGTGGGGCCACGGAGCGGAGCCTGCGGGGAGCGTTGGAGGGTAGGTTTCTGCGGGTCGGTGGATGAATCCCACACCGATCTCCATGTAGCCTTCTCCCTGCAAGGATTCTCAAACTAAGACCACGGAATCACCCACACGCACCCCATTCCCTCCTTACCTGTCCTTCCAGTTTTTTCTTTCCTGGGTTTAGGCTCCGACTAGGGTTCCCATCCCAGCTCTAACATGTCAGACAAAGCACTTCACCCAGTACATTTCCTCATCTGTAACACGAGGAAAATAGCCATACCCACTTCAAGGGGTGGTTGAGTGGATTAAATGAGAAAATCCATGTAAAGTTCATAGTACAGTGCCTGGCATAGCAATAACCAATGCACTTTACATATTTCACCTCAGGTAATCTATAGTAAAGCACTACAGCATAAGGCTGGCCTATAATAGATATTCAGCAAATGCCAGTCTGTGCCTCCCTCCCATCCGCCTTCCTCTCATTCCATCCACCCCCACTCATCTCTCTACTCCCCACCTCCTCTCTTCTTCCTACCCACCATCATTCATTCAATCATTCTTTCACTCAAGATATTTCTTGAGCACCTTCTACATGCCAGGCACCGTGTTAGGCATTAGAGAGACACCAGTGAACATAAAAAGCCAAAATCCTGCCTTTTCAGAGTTTACATCCTAGGAGATAGACAAGCAACAAATTCAATAAATAAGCACGCATTATGTTAGAAGGTGGGGGGGAATAGACCAAATCTCCATCCCCATCATCCCCATCACCCAAGCTTTCCATGCTCCCAGGGCCCCCACAAATATCCACATCAGCCGTGGTCAGACCTGTGCCCATCCTCGGGGCTTTGGGTAGGTGCTACAGGGGAAGATGCTACAGCCTCTGCTTGTGGAGGTCCCATCAGGGCAGGAGGTGATGAGGAAGCGTCACTGTGAGCCCCAGGAAGTCTGTGTGAATGGGGCCAGGCCATCCTAACAATGGGCACCCAGAGAGGGAGATTTCTGCAGAGATTTTTGAAGAGAGGGTACATTGCAGGAAGATGGGGGGAGATGAAGGCCACCCTGTGGACCCAGATAAGTCATGTTAGATGAAGAAGGGCCAGGATGCCAGGCTGGAGTGAGAGGGGTACAGGCACCTGGGCTGCAAAGGCTGCTGTGGCCCGGCCATGAAGACCTTAAGATCAGACTGAGGGCCAGAGCACCCCACCAGCTCCAGGGACGCCCAGGACAATCCCCAACTTCCCTGGTGAGCCCCAAGTACAGCTTCAGCCATCACCTGACCTCAAATTCTTTTCTTTTTTTCATCAATTCTTTTTTTCTTTTTGAGACAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAACGGCGCGATCTAGGCTCACTGCAACCTCCGCCTCCCAGCTTCAAGCAGATTCTACTGCCTCAATCTCCCAAGTAGCTGGGATTATAGGCACCCACCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTATGTTGGGCAGGCTAGTTTTGAACTCCTAACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGTCACCGCGCCTTTGACCTCAGATTCTGAGTGAGTTGGGGAAGGAGTTCTGTCTGTACTTCCCCCCACCCCCTACTCCTTTCTGGATCCTGAAGCTGTTTCCGTCAAAAGCAGGATGGGCTGCAGCACCAAGTTTAGACAGTGTGATCCGTTTATTTTTCTTGGTGAGATCAGAACTGAACTTGAGTAGCATTCCTCTTCATTGCTGAAGTGAAGAGTGGATCAGAAGGCTGGGTCAGTTATCCAGGCCCAAAGCTATGCAGCCTCAACTAGTGTAGTTGTTTAGAATGCCAAGACGTCACAAATGAGAGGTTTTCATGAACTGGGAACTGACTGGAGGAGGGGAGTTGAGAGAGGAGACAGGGATGACACCCAGATTCCATGCTTGGCAACTCAGGACAGGACCATGTCAAGTCCGTATGGCATCTCTGTGAAAAGATGTCTCTGGACCAACACAACTCCACGTGAGAGCTCAGAACTTAATGGTTTTAGTCCCTACATTGCATCCTTTGTTGCAGTGCACAACCTGCACAACCATGCATGGCAGCTCTCACTAGGAGCTTGATGAGACCATTCCTGAGATGAAAAAGTAGAAAGAACAGATAGAAGCAGGAGGAGATGTGGTGAATGTGGTGGGCTGAGAGGCCATGGGGCATCTAGCTGATGTCCAAGAAGCAGCCGCAGGAGGCAAACCTGAACCCTGGGAACTGGGGATGCCATACCTGCCTCACAGCACCTGCTCTCTGGTTCTGCCTCCAG
Seq C2 exon
ATCCTCTGCCTCTCCCCTGGGTGCTACAGGAAGTGGAGCTAAGGCTGCTGGGCGAGGCCACCTGTCAATGTCTCTACAGCCAGCCCGGTCCCTTCAACCTCACTCTCCAGATATTGCCAGGGATGCTGTGTGCTGGCTACCCAGAGGGCCGCAGGGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226:ENST00000268281:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains