RnoINT0118735 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199390229-199393678:-
Coord C1 exon
chr1:199393398-199393678
Coord A exon
chr1:199390396-199393397
Coord C2 exon
chr1:199390229-199390395
Length
3002 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTCTCTGGTTCTGCCCTCAGACC
3' ss Score
10.67
Exon sequences
Seq C1 exon
GAATGGGACCTTGGAGCCTGCGGACGAATGGTCAGTCCTGCTGGGCGTGCACTCCCAGGACGGGCCCCTGGAAGGAGCGCACATGCGCTCAGTGGCCACCATCCTGGTACCGGACAACTACAGCAGAGTGGAACTGGGCGCTGACTTGGCTCTGCTGCGCCTGGCCTCGCCAGCCAAGCTGGGCCCCTCCGTGAAGCCAGTCTGCCTGCCTCGTGCCTCACACCTCTTCGCTCACGGAACTGCCTGCTGGGCCACTGGTTGGGGAGACGTCCAGGAGTCTG
Seq A exon
GTAAGTGGGGCACACCACCGCCCTTGCAAGTGTGGGTTCTGAAAGCTGGGTCCTTTGGTGGGTTGCTGCCTCGGAAGCTGAGTCGAAAGAGTGGGACCCAGGCGGAGCTTGGGAGATTTGGTTCTGATCCACGGAAAATTCCTAACCTCCTTTTAAGTACCCTCCTCTGTCCCGACATTGCCTCATTCCTGGTCTCACCGTTTCTCTCAGTTCGTTCTTTCTTTCTTTCGTTCTTTCTTTCTTTTCTCTTTTGGATTTAGGTTAGATTCGGGTTCCAGTCCAGCTCTTTTAGACAAAGCATTCCCCCCCTGCACATTTCCTCCTGTGAAAAGAAGGAAACAGCTCCCGGGGTGTTGGGTGGCTCGGTGGAGAAAACCCAAGTAAAGCCTATCAGCAGTGCCTAGCACAGTGTGTCGGAGGAGGGCAGACTGCTTTGCCATTTTCTATCACCCCTATTACTCGGTGTTACTTTGTCGCTAGTAAATACACCCATAGCTATTCTATGTGTGCTTTGGTCAGACTTCGCCAGGGGTTTTAGGAAGGGAATTGTGGAGGAGATGCTACAGCTGCGACTTGCAGGGGTTCCGACGAGCAACGGTGATCATGAGCACCCAGGAAGTCTGTGGAAAGAGCCAGAGCGTCCTGACCATGGGCCTTCAGAGCAGGAGATTTCTGGGAAGGAGGCTGTGTGAAGAGCGAATGTGCTAAATCAAGGCCATCCTGAGGGCCCTGGGGAAAACCCGGGCTGCTACAGAGTGTCGGGCAAAGCTCACAGGCTGCTGAGGCTGGATATAGAAGATCTTAAAGTAAGATCTGAAGGACAGAGTAATGCCTTGGTAGTAAGGGCGCTACCAAGGTCCCCAGATCACCCCGAGACTTCCCCAGCTGAGCTTCAAGGGCAGGTTCAGCCAGAGTTTGCTTGACCTCTCAGGATTCTAGTGAGTCTGGAAGGACCTCTTCACATTCCCTTTCCCTCTCTGGCTCCCGAGTCTTTTCATTGAAAGTAGCACCTGGGCTGGTTGCAGTGGTGCACACTTTTTTTTTTTGGTTCTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCAGTGGCGCACACTTTTAATCTCAGCACTCTAAGAGGCAGAGGCAGATGAATCTCAGGGTTCAAAGTCAGAATGTTCTACGTAGTGAATTCTAGAACAGCTAGGCTACACAGTGAGACCCTGTGTCAATAACAACAGCGACAACAAAGGTAGCAGCCAGAAGTGATAATATACACCTGGAGTCCCCGCTTAGCACTGGCGCCCCAGCATGAGCCTGCAGCATCCATTTACTCCTGGAAGTGAATTAGGAAACTGACCAGTCAGGAGGCCCCAGCTTATGCTGCCTGGATTACACTGAGAATACAGAGACAAGTGGGACATCTTGGGAGCTAAGTGGGGAAGGTGAGTTTAAGGGGCATCAGGGAGGCTGGAGAGAAGGCTCAGCAGTTTAAAAAGGAGTTGCTGCTGTGGCAGGGGACCCAGATTTGGTTCCCAGTACCCACGTGGCAGCTCCCAAGCAAATGTAACTCCACATAACTACATTTCCAGGCTATCCTGTGCCCTTCTCTGACCTTTGTACGCACACGCTAGGAACACATGTGATGTACACGCAATCAGGCAAAACACTCATATACTTAAAATAATCTTTTAAAACGGGGACAGAGATGACGCCCAGATTCTTTTTGTTGTTGTGGTTTTGCTTTTTTGTGTTTGTCTTTCAAGACAGGGTTTCTCTGTGTGACCCTGACTGTCCTGGAACTCACCTTGTAGATCAGACTGGCCTTGAACTAAGAGATTCGCTGTGCCACCATGCCTGGCTAACACTCAGATTCTTATCCTAAAGTCCAGTTTCTGTGTTTGGTACATGGATACAAGACCATATTTAATATACGTGGTATCTTTATGTAAAGATTGCTCTGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAGATTGCTCTGTGTTTGAACAGATACCCATTCCACAGCAGGGTTGAAAGCTTGATGTTCTTAGCTCTGGCATATACACATTGTTGTCTGGGTGGGGACCTTGTAAGTACACAACCTGTAGCATCTGTAACTGCTCGCTCTCACTGGCTGCTTACAGGGCCCAAACATAAGAACAGGACTTAGAGAGGAGCAGCAGATGGTGTGATGTAAGTGATAGGCCGGGGATGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGTGCAAGGCCCTGGGTTTTGTCCTCAGCTCAAAAAAAAATAATAATTAATAAATTAATTAAAAGCATGTACTAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAAATAAATAAATAAATAAATAAATAAATAAATAAATATTTAATTAAAAAAAAGCATGTGCTATAACCACTCATCTTTGCTTTGTTTAAAAAAAAAGAAAAGAAAAAGAGAGTGTTAGGACAGGTTGCCATGTTTTCTTTCCCCCAAAGTAGGGCCTCACATAGCCCAAACTAGCATTGAACTTGCTATGTCACTGGTGATAATCTTGAGTTTCTGAATCTCCTCTTCTCGTTCCCAAGTTCTGGGATTACAGGCATGCGCAGGACACCTGGTTTTCTCAGTTCTGGAGATGGAGCACAGGCTTTGTGAATGTTAGCAAGCAGCCTACAGATTGAGCTACCTCTTCAGACTCAGTAGAGGCATGCTGATGGAAATACCTACGAGCAAAGGTCTGGAGAGATGAGCGTTTCATACCTAACTCACAGTTCTGTTCTCTGGTTCTGCCCTCAG
Seq C2 exon
ACCCTCTGCCTGTCCCCTGGGTTCTACAGGAAGTAGAGCTAAAGTTGCTGGGAGAGACTGCCTGTCAATGTCTCTACAGTCGGCCTGGCCCTTTCAACCTGACTTTGCAGCTGTTGCCAGGAATGCTGTGTGCTGGCTATCCAGAGGGACGAAGGGACACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.2=100)
A:
NA
C2:
PF0008921=Trypsin=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]