HsaINT1028239 @ hg38
Intron Retention
Gene
ENSG00000189099 | PRSS48
Description
protease, serine 48 [Source:HGNC Symbol;Acc:HGNC:24635]
Coordinates
chr4:151279796-151282413:+
Coord C1 exon
chr4:151279796-151279958
Coord A exon
chr4:151279959-151282147
Coord C2 exon
chr4:151282148-151282413
Length
2189 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CTCCTTTCTTTTCCCCATAGGAC
3' ss Score
13.14
Exon sequences
Seq C1 exon
TGTGTGGGCAACCTGTATACTCCAGCCGCGTTGTAGGTGGCCAGGATGCTGCTGCAGGGCGCTGGCCTTGGCAGGTCAGCCTACACTTTGACCACAACTTTATCTGTGGAGGTTCCCTCGTCAGTGAGAGGTTGATACTGACAGCAGCACACTGCATACAACC
Seq A exon
GTGAGTTCTAGCTGGCAGCTAACACACAGACAGGTTCTCAGTGAATATTTGCATCACTTCATGAATGAACCAAAAGACAAATGAAAGTGGTAAAATAGGCAGGGCGGAAGGAAACCCAGGTCATGTCAGACTATCAAACCCGAAACAACTAGAGACAGGGCATAGAAGTAGAAAAAGGAAAGTTGGAGACAGGCACTATATTAAAGACTTTTCTTATTTTTTGCCAAATCACCTTCTAAATACCAGTCAGGAGATTTTTGTCGTGTTTTTGGGTCATAAACACAATCTGAGCTCTAAGAGCCACTGCTGTGAGAGAAGCAACTTGTCATGTGGTGAGTGTCCCTATGGAGAGGCCCATGTGGAACCCGCATCTCTAGTCAACAGCGAGAAGACCCAAAGCCTACCAACGTGAGTTTGGACACAGATCCTCCCCAGTAAGATGACTGCAGCTCACCTTGATTGCAGCTGCAGCTCACCTTGATTGCAGCCACATGAGAAACCTTGAGTCAATGGTACTCAACTAAGTCACACCTGATTCCTGACCCATAAAAACTATGAGATAAATATTTGTTGTTTTAAGCCACTAAGCTTTATAACTTATTATGCAACAATTGATAACTAATACACAACAGAAATTAAAATTCCAGGACTCTTCAATAACAACACTGAAAGTTCAATGAAAATAAGCCAGGTGTGGCAGCTTGCACCTGTAATCCCAGCTACTCATGAGGCTGAGGTAGAAGGATCACTTGAGCCTAGGAGTTCAAGGCTGCAGTGACCTATGATTGTACCACACATTCCAGCCTGGGCGACAGAGTGAGACCCTGTCTCTAAAAAAAAAATTAAGTTTAAAAAAAAACTCAAAGAAAATAGAGTAATAACTTCAAAATGCTAAAAAAAATTTATTTCCAACTTAGAATTCTACCCATATGCAAACTATCAATCAAATGTGGGATAGAAGTAAAACATTTTCACATACACAAAGCAGCAAAAATGTTACCTCTCATGCACATTTTCTCAAGAAGCCATAGGAGAATCTGCTCCACCAAAATAAAGGGGGAAAAACAGGAAAACACAGGATCCAGACAAAAGGGGAATAAAACACAGAAGAGAATCCCTAAGAAAGTCATAAAGGATAAAGAAAGTGCCAAGATGATGGCTGTGCAGCAGCCCAGATTAGAACAAGAGAGCAGAGGGCTCCAAAAAAAAGATAGTATTGATAGAATGCCTGACAAGTTTGAACAAAATGAGAGGAGATTTACACTTCTGGTGGAGAGCCTGGGGAATGAGACTGGTGATGGGTATAAAGATAAAAACAAAAAACCAAAGTGAGCCCACTTATCAACTCCAGGAGAAGCAAAACGTTTTATAAGAAATGTAATCACCCAATAGGACCCAGTAGTGAACAATGTTTACATAGTCACAAGAACAAACGCATTAAATACTGATCTAACGAAAAGTTATGATAACACTGGCTAGGAGGATGGGTGGAATGGAAGTGGGAGGTGGGGGGTAGACAGCGATGTGTAAGAAAGCTCAATCCTCACCTTCCACACTAGGAACTCAGGATTCTAAAACTGAAAAAGAAAAATCAAGAAACAGCTATATATAGGATTTCTTGAAAACACTTGAAAATTACTAAGAGCTAAAAGAGTTGAAAGTCATTGCCTCTAAATAGTTTGAACTGAGGGTGGTGGGGCAGAGAACTTGTTATTTATTTATTTATTTATTTATTTATTTTGTACATCTTATCAAATTACCTGGCATTTTAACTGTGTATATGTGTAACTGTGGTTATATTTTGCTTTAAAATTTTATTCAGAAATGAAGGTCTAGTGCTCAGAACAGAAATTAGTATGGACAATAAACAGCAATGTCTATTAAGCATACAGGTGATGGCTGAAACCATGGAGAATGGGAGAGGTAAATGAGAGAACCGGAGAGAAAACACAGGGCAAAACTCAAGCCACAAGCCTCTAGGAAGAGACCACAGAAAGAGTGGTCAGGGAAGGACGGGGAGAAAGAGAGGAAAGAAGGAGACAAATCAACCCTAGTTGAAGTTGGAAGCACCATGGTTAATTCCCAGTTGGCTACCCTCCTTTCTTGAGTAGAGACTTAGTGCTACATATAGGCAGCCTGTTCTGACCCAGCTGCAGGCCATAAGCAGGCCTCCTTTCTTTTCCCCATAG
Seq C2 exon
GACCTGGACTACTTTTTCATATACTGTGTGGCTAGGATCGATTACAGTAGGTGACTCAAGGAAACGTGTGAAGTACTACGTGTCCAAAATCGTCATCCATCCCAAGTACCAAGATACAACGGCAGACGTCGCCTTGTTGAAACTGTCCTCTCAAGTCACCTTCACTTCTGCCATCCTGCCTATTTGCTTGCCCAGTGTCACAAAGCAGTTGGCAATTCCACCCTTTTGTTGGGTGACCGGATGGGGAAAAGTTAAGGAAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189099:ENST00000455694:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.7=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains