MmuINT0127529 @ mm10
Intron Retention
Gene
ENSMUSG00000049013 | Prss48
Description
protease, serine 48 [Source:MGI Symbol;Acc:MGI:2685865]
Coordinates
chr3:85998054-86000544:-
Coord C1 exon
chr3:86000382-86000544
Coord A exon
chr3:85998314-86000381
Coord C2 exon
chr3:85998054-85998313
Length
2068 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
CCTCTATCTTCTCCTCGTAGGAC
3' ss Score
10.58
Exon sequences
Seq C1 exon
TATGTGGACGACCTGTACACACTGGACGCATTGTGGGTGGCCAAGATGCTGCTTTGGGGCGCTGGCCCTGGCAGGTGAGCCTGCGTTTTGACTACACCCATTCTTGTGGAGGTTCTCTCATCAGTGACCACTGGGTGCTGACGGCAGCACACTGCATAAAAAA
Seq A exon
GTGAGTTGTAGCTGGGAGCTAGCACGCAGAGGCTTCTGGGAAATGTTTAGATGGTGTCATGGGAACCAAGTGCCAGCATTCAGATCTGTGGGGCAGCAGGGAGCCCTAAGTCACACAGGAGTGAATGGAAGGGCGAGACAGTTCCTTCCTTCATGTCAGCTTACTTCTGAAATACAGGTCAGGGGTTTGTCTTGAGCTTTTGGGGCTCACAAATATAATCTGAGCTTTCTCAGAGACACTGTGTGAAAACAAGTTGCTGCGTGATGAGCACCACAGGAAACTGGTTCCTCACAAAGACTCCAACTCAAATAAGTGAGCTGGAAACAGACTCAGTCAAGCCTAGGATGGCTTCAAGCCCACTCCAATTGGAGCAGCTTGAGAGACCCCGAGATGGAGACAATTGTTAGGTCACATCTGACCCCTGACTCAAAGAATCTGAGACACAAGTATTTTTTTCATTTGTACCACAAAACATTGTAGCAACTAATTGTGAAACAACAGATAATTAATATGCATAGAGGTCAAAATAACAGGATTTTTATTAACAACCATGAAAACTCAGGAAAATGGTGTAGTGACTTCAAAATGCCGAGGGAGAGTTTCTTCCCAGGCCAGAATTGTATAGTCTATCCATATATCCATATACTATGAATCAATAGGATATAAACAGACATTTACAAATATACAAATTCATAAAAATGTTACCACCCACACATATGGGCAGGGAGGAACAGAAAAACAGGACCAAGACAGAATAGTAGGCTTTAACTCAAGAGAACTCTCAAGAAGATCATAAATATTATAAATATAAGTCCAAAATGATAGCAGCTGTAGTAGACCAGAACAAGAGGGCCAAGGGCCACAATGAGGTGGGGTGGGGTGGGGTGGGGGCTCACAGACTGCCTGAGAGGCCTGGACATCCTGAGGAGTCTGTATTTCTAGCAGAGAGTTTGGGGGCAAAATGACAGATTTGAGATGGGTGTATAGAAAGCAGAAGGAGGAGGCTACGTTATTAAGTTCAGGAAAAGCAAAAGGTTTGGTGAGAAATAAAGAGTCACAAGATCCAATGTAACCTGTGGTGCAGGAAGCCTACACAGTGATGAGAAAACATTGATCTAACCCGCATTGGTTAGGAAGAGGAGTGACAACCAATCAGAGAGGGGCTTGTCTCAGTCGCTGTAATAAAGACCATGACCAAATTAACCCATCCAGGAAAGGCTGGTTTCAGCTTACAGGTGAGGTGTCCTGAAGTAAATACAGGACAGAAACTTAAGGCAGCAACTGAAGCAGAGACCACGGAGGAACCCTTCCTACTGGCTTGCTCCCCTCCCCATAGCTAGCTCAGCCTGCATTCTTTTACCACCAAAACCTTAGGGGTGGCACACTCCACAGTGGGTTGGACCCTCCCACGTCAGTCATCAATCAAGAAAATGCCCTGCAGATTTGCCTCCAGACCAGTCTGATGGAGGCATTTTCTCAGCTGAAGTTCCTCTTCCCAGCTGTGTCAAGCTGACAAAAAAAACAAAAACAAAACAAAAAAAAACAAAAAACAAAAAACAACAACAAAAAACAAGCAAACAAACAAACAAACAAAAACTTAGTAGAGCAAGGCTAGTCAGTGAGATGTGTAAGGTAGCTCAGTGTTCACCTTCTAATTAGGAACTCAAGACCCAAAGTGTATGTGTGTCTGTGTCTGGGGTGGGGGTTGTCAAAAAGACAAAACTGTGTTTCTTAAAAACACCAGGGAAACCATTAAGGGCTGAAAGCTGGAAGTGACTAACTAACTAACACACACACACGCACACACACCTATGGAAGGGGTGAGAGAGATCAGGGAGAGTATGTAGGACAAACTCTGGCCACCAGCATGTAAGAGGAGACAGCAGGAAGAGAAGCCAGGGCAGGGCACAGAGAGAAGAAAAGGACACAGACTAATCTTAGCTCAAGATTTACTGAGTGCTGGTATCCTCCTTTCTTGTTCAGAGTCTTTGGGGTACAGATAGGCAGCTTGTTCTGATCTACGTAGGCCAACCCTCCACTTTGACTTTCCTCTATCTTCTCCTCGTAG
Seq C2 exon
GACCTGGTACAGTTTTCTATACAGTGTGTGGCTTGGATCCATCGATAGAGAGTACTCAAGCACAGGCAAAGAATACTATGTGTCCAGAATCGCCATCCCCGACAAACACCGCCACACAGAAGCAGACATCGCCCTGCTGAAGCTGTCTTCCCGGGTCACCTTCTCATCGGTCATTCTGCCCATCTGCTTGCCCAATATCTCAAAGCAGCTGACAGTTCCAGCTTCTTGCTGGGTGACTGGATGGGGACAAAATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049013:ENSMUST00000061343:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(37.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types