RnoINT0118788 @ rn6
Intron Retention
Gene
ENSRNOG00000024208 | Prss48
Description
serine protease 48 [Source:RGD Symbol;Acc:11436036]
Coordinates
chr2:185298879-185301428:-
Coord C1 exon
chr2:185301266-185301428
Coord A exon
chr2:185299139-185301265
Coord C2 exon
chr2:185298879-185299138
Length
2127 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCCTCTCTCTTTCCTCTCAGGAC
3' ss Score
12.43
Exon sequences
Seq C1 exon
TATGTGGACGGCCTGTATACTCTGGACGCATTGTGGGCGGCCAAGGTGCTGCTCTGGGGCACTGGCCCTGGCAGGTCAGCCTGCGGTTTGACAGCACCCACATCTGTGGAGGTTCTCTCATCAGTAACCACTGGGTAATGACGGCAGCACACTGCATAAAAAA
Seq A exon
GTGAGTTGTAGCTGGGCGCTAACACGCAGAGGCTTCTGGGAAGTGTTTGGGTGGTGTCGTGGGAACCAGGAGACCAGTGCCAGTGTTCAGATCTGTGGGGCAGCAGAGAACCTTACATCACCTCAGAGTGAATGGAACGGGGGGTGGGGGGGGGGGAGGAGACAGTTCCTTTCCTTGGTGTCAGCTTACTTCTGAAATACAGACCGGGGCTTTGTCTTGAGCTTCTGGGGTCTTGCAAACATAATCTGAACTTTCTCAGAGACACTGTGTGAAAACAAGTTGCTGTGTGGTGGGCACCACATGAGACTGGTCCCTCACAAAGACTCCCACTCAATATAAGTGAGCTGGAAACAGATTCAGTCAAGCCTGGGAGGGCTGCAAGCCCACTCTGATTGGAGCGGCTTGAGAGACCCTGAGACAGAGAAAATAGTTAGGTCGCATCTGACCCCCTGACTCAAAGAATCTGAGACAGGAGTATTTTTTCATCCATACCACAAAACACTGTAGCAACTAATTGTGCAACAACAGATAGTTAATGTGCACAGAAGTCAAAATAACAGGCTTTCTATTAACAACTGAGAAAATTCAGGGAAATGACGTAGTGACTTCAAAATGCCAAGGGAGAGTTTCTTCCAAGGCCAGAATTATATATTCTACCCTTTATACTATATATCAATAGTATGTTGTATATTGCATATACTATGAATCAATAGGATATAAACATAGACATTTACAAATATACAAATTCACAAAAAAAGTGTTACCACCCACACATATGGGCATGGAGGAACAGGAAAACATGGGTCTAGACAAAATAGTAGGCTTTAACATAAGAGAATTCTCAAGAAGGTCATAAATATTATAAATATAAGTCCAAAACGATAGCAGCTGGAGCAGACTAGAACAAGAGGGAAGAGAGCCAAAATGGGGTGGGGTGGGGTTGGGGTCACAGACTGCCGGACGGGGCTGGACACACTGAAGAGTCTGTATCACCAGCAGAGAGTTCAGGGGCAAAACAATGGATTTGTGAGGCTACGTTATTAACTTCAGGACAAGCCAAGGGTTAGATGAGAAATACAGTCACAAGATCCGATCTAATCTGTAGTGCAGGAAGCCTACACAATGATGAGAAAACACTGATCTAACCCTATCAGTTAGGAAGAAGAGTGACAACCAATTGGGGAGAGTCTTATCTCAATCACTTCCTACTGCGGTAATAAAGACCACGACCCAAATCAACCCAGCGAGGAAAGGTTGGTTCCGGCTTACAGGTGTAGTCCATCATGAAGACAGGAGAGGACTGAAGGCAGCAACTGAGGCAGAGACCCTGGAGGAACCCTGGCTGCTCCCCATAGCTAGCTCAGCCTGCATTCTTATACCACGAAGACCTGCCTTGGGGTGGCACACTCCACAGTGGACTGGGCCCTCCCATATCAATCATCAATCGAGAAAATGCGCCCCAGACTTGCCTACAGACCAGTCTACAGACAGTCTACCGCCATCTACAGATGGAGGCTCCTCTTCCCAGCTGAGCTGAGCTGACAAAAAAAAAATAAGTACTAGAACAAGGCTAGTCAGTGAGACGCATAAGAAAGCTCAGTGTTCACCTTCTAATTAGGAACTCAAGACGCAAAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGAGTGTGTCTGTTTGAGTGTCTGTGTGTGAGTGAGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCTATGCCTGTGTCTTGGGTGGGAGTTGTCAAAAAGACAAAATAGTGTTTCTTAAAAGCACCAGGGAAATCATTAAGGGCTGAAAGAACTGAAAGTGACTGACTCACACACACACTCACACACACACGTGCACACTGTGGAAGGGGTGAGAGAACAGGGAGAGTATGTAGGGCAAATTCTGGCTACCAGCATATAAGAGACCACAGGAAGAGAAGCCAGGGCAGGACACAGAGAGAAGAAAGGGACACAGACTACCCTTAGCTCACGGTTAACCAAGTGTTGGTATCATCCTCTTTTGTTCAGTCTTTGGGGTACAGAAAGGCAGCTTGTTCTGACCTACTGTAGGCCAACACTCCACTTTTATTTTCCTCTCTCTTTCCTCTCAG
Seq C2 exon
GACCTGGTTCAGCTTTCTTTACAGTGTGTGGCTTGGATCCATCGATAGAGATTACTCAAGCACAGGCGAGGAATATTACGTGTCCAGAATCGTCATCCCTAGCAAACACCACAATACAGACGGAGATATCGCCCTGCTGAAGCTGTCTTCCCGGGTCACCTTCACGTCGCTCGTTCTGCCCATCTGTTTGCCCAATATCTCAAAGCCGCTGACAGTTCCAGCTTCTTGCTGGGTGACTGGATGGGGGCAAAATCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024208:ENSRNOT00000046286:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.0=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(37.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]