DreINT0147651 @ danRer10
Intron Retention
Gene
ENSDARG00000070710 | si:dkeyp-41g9.6
Description
si:dkeyp-41g9.6 [Source:ZFIN;Acc:ZDB-GENE-030131-7092]
Coordinates
chr6:39112297-39112844:+
Coord C1 exon
chr6:39112297-39112465
Coord A exon
chr6:39112466-39112575
Coord C2 exon
chr6:39112576-39112844
Length
110 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TCATTCTTGACTGTTTTCAGTGT
3' ss Score
7.68
Exon sequences
Seq C1 exon
TTTGTGGACAAGCCCCTCTGAACACTCGCATTGTTGGGGGTGTAAATGCATCTCCAGGTTCATGGCCTTGGCAGGTCAGTCTGCACAGCCCTAAGTATGGAGGTCATTTTTGCGGAGGCTCCCTGATCAGCAGTGAATGGGTGCTGACCGCAGCTCACTGTTTATCTGG
Seq A exon
GTGAGATTCACATCAACACACACTCATCTGTTTTGTGTTGACCGCTAATATACTAGGCTGATTAATTGTTTTGCTTTTTTCCTCACTTTCTCATTCTTGACTGTTTTCAG
Seq C2 exon
TGTCTCTGAAACCACTCTGGTTGTGTACTTGGGAAGGAGAACACAGCAGGGAATCAATATTTATGAAACTAGTAGAAATGTTGCCAAATTGTTCGTTCACTCCTCCTACAACAGCAACACAAATGACAATGACATCGCTCTGCTGCGCCTGTCCTCAGCTGTAACCTTCACTAACTATATCAGACCTGTTTGTCTGGCGGCCCAGAACAGTGTCTATAGTGCTGGCACCAGCAGCTGGATCACAGGCTGGGGAGATATTCGGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070710:ENSDART00000154232:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=80.7)
A:
NA
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCGCAGCTCACTGTTTA
R:
TGGTGCCAGCACTATAGACACT
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]