MmuINT0127451 @ mm9
Intron Retention
Gene
ENSMUSG00000024124 | Prss30
Description
protease, serine, 30 [Source:MGI Symbol;Acc:MGI:1353645]
Coordinates
chr17:24110544-24111073:-
Coord C1 exon
chr17:24110908-24111073
Coord A exon
chr17:24110816-24110907
Coord C2 exon
chr17:24110544-24110815
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CTGGGCCTGTCTCTTCCTAGGTC
3' ss Score
11.8
Exon sequences
Seq C1 exon
TATGTGGCCACTCCCGAGATGCTGGAAAGATCGTGGGTGGTCAAGATGCTTTGGAAGGACAATGGCCTTGGCAAGTCAGCCTGTGGATAACCGAGGATGGCCACATATGCGGGGGCTCCCTCATCCACGAGGTGTGGGTGCTCACGGCTGCCCACTGCTTCCGCAG
Seq A exon
GTTAGTGAGGTAGGGTGGAGAGTGGCAGCTGTTCTCCTAACTCTGCCGCTCTTCAGCAGATGCCTCAACCGGCTGGGCCTGTCTCTTCCTAG
Seq C2 exon
GTCTCTGAACCCTAGCTTCTACCATGTGAAGGTTGGAGGGCTGACACTTTCCCTTCTGGAACCCCACTCAACTTTAGTGGCCGTGAGGAACATCTTCGTGCATCCCACCTACCTCTGGGCAGATGCGTCTAGCGGAGACATTGCCCTGGTGCAGCTGGATACTCCTCTGCGGCCCTCTCAGTTCACTCCTGTCTGCCTCCCAGCAGCCCAGACTCCTCTCACCCCTGGGACTGTCTGCTGGGTGACAGGCTGGGGAGCCACCCAGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024124-Prss30:NM_013921:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.1=80.4)
A:
NA
C2:
PF0008921=Trypsin=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAAGGACAATGGCCT
R:
AGAAGGGAAAGTGTCAGCCCT
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: