BtaINT0118728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040394 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr25:2128428-2129913:-
Coord C1 exon
chr25:2129751-2129913
Coord A exon
chr25:2128700-2129750
Coord C2 exon
chr25:2128428-2128699
Length
1051 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GGTCTCTACTCTCCCACCAGCAC
3' ss Score
6.43
Exon sequences
Seq C1 exon
CCTGCGGCCGCCCGCGGATGCTGAACCGGATGGTGGGCGGGCAGAATGCCTTGGAGGGCGAGTGGCCCTGGCAGGTCAGCATTCAGCGAAACGGAAGCCACTTCTGCGGGGGCAGCCTCATCACGGACCGGTGGGTCCTCACCGCCGCGCACTGCTTCTCCAA
Seq A exon
GTGAGTCGACTGCGCCCCGCACTCCGCTCCGGGGGCACAGATCGTGCGACGGAACCGCCCCCTCCCCGCGCGCCGTCCGCAAACGCCGGGCTTCAGCACCGCGGACAGCGCCGGCCCGCGGACAACGGCGGTGCGGGGCGCCCAGGCCGGGCCCCCACGGCCCGAGAGAGGCTGCGTCTGCGCCATCTGAGCCTTCCCTGCCAGGGCTCCCTTTGGGTCCAGCCTCGGGGCCAGCTTCCAGCAGCAGCCCCTGCTTCCGGGCTCTTGCTGCCCCCAGCCCAGCTGGGAGGGGTCCATTTCCCCCGGGGGGCTCACAGTGAGGTGCTTTCCCAGACAGGCCGCCCCTGCTGCTGGCCGCAGGGTCCTCCTGTTGCCTGCCTCTCTTCCTTGTCTCCTCCCACACCTCAAATCCAGACACTCCCTTCCTGATTGGGGCTCTGGGCACAGGTGGACGAAGCAGAATGGCCATTCCTCCTCCTCACTCTGAGGTCACCTACACTGGCCCTAACCAAAGGACCAAGCTACCCAAACCCTGCTTCCACACCATGACCTGCCTGGTCCTAAGCCTTCAGGGCTGCCTAGGCATCTCAGCTCTCTCCATGCCACAGCTCTTGCAATTCTAAAACCTCACATCTCAAGTTCAGAAATCCAGGCTCAGAGTGAGCAGGTCACTTGCCTCAGGCTGGGCCCCGGTGGGTGATCATCTCCTTCGACCCCCACAGACAGCCTTTCAGGTGGGGACTGTTACTGTCCCCATTTTACAGACAAGGAAACGGAGTCACAGAGAACTTGCTGGGTGACTTGCGCGAGGTGGCTGGGCTGGCCAGGGTGGAGCTGGGAATTTAAAGCTGCTTGGGGTTTACACCCTTTCCCACCTCATCTCTTAGTACACCCCCCTGGAGAGTGTGCTCCGGAAGACACAGTGTAGACTGAGCTGTCAGCATCCTGGGGAGCGGGGAGGAAGTCCGACTCCTCCCTACTTCTCATCTCCACTTAACTTCCGCTGACGCCTCCCAGGCCGCCTCACACCGGGTCTCTACTCTCCCACCAG
Seq C2 exon
CACCTCTGAAACATCCCTGTACCAGGTCCTGCTGGGGGTGCTGCAGCTGGCGAGGCCAGGGCCACACGCCGTGTATGCCCGGGTGAAGCGGGTCGAGAGCAACCCCAAGTACCAAGGCATGGCCTCTAGCGCCGATGTGGCCCTGGTGGAGTTGGAGGCACCTGTGACCTTCACCAACTACATCCTCCCCGTGTGTGTGCCTGACCCCTCAGTCGTCTTTGAGTCGGGCATGAAGTGCTGGGTCACCGGCTGGGGCACCCCCAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040394:ENSBTAT00000027417:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATGCTGAACCGGATGG
R:
ACACACGGGGAGGATGTAGTT
Band lengths:
345-1396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]