HsaINT0132960 @ hg38
Intron Retention
Gene
ENSG00000172382 | PRSS27
Description
protease, serine 27 [Source:HGNC Symbol;Acc:HGNC:15475]
Coordinates
chr16:2714065-2715880:-
Coord C1 exon
chr16:2715718-2715880
Coord A exon
chr16:2714337-2715717
Coord C2 exon
chr16:2714065-2714336
Length
1381 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTCTCTGTTTCTCCCGCCAGCAC
3' ss Score
9.95
Exon sequences
Seq C1 exon
CCTGTGGTCGCCCCAGGATGCTGAACCGAATGGTGGGCGGGCAGGACACGCAGGAGGGCGAGTGGCCCTGGCAAGTCAGCATCCAGCGCAACGGAAGCCACTTCTGCGGGGGCAGCCTCATCGCGGAGCAGTGGGTCCTGACGGCTGCGCACTGCTTCCGCAA
Seq A exon
GTGAGTCCGCCCGCCCCTGCCCCCGCCCATAGCGCTGACAGCGCCCCGCGCGCGACCGGTTCAGCACCGTGGACAGCGCCCGCCGCGCCAAATCCTGCGGGTGACCTCCCTGGGGGCTCCTGGTCCAGCCCCTCCCACCCAGATGCTTCCCTTAGGTCCAACTCCAGGGCTAACTTCCAGTTGCAACCGCTGCTCCCGCCCGCGGGAGGTGCCTCGCACCGCCCCCCGACCCCCTCCATCCCCTCCACCCACTCACCCACTCCCTGTGGGTCCCTGCAGAAGCGGCCCGGCAGGCTCTGCCCACCGGCCCCTCCTGGCCTTTCCCCATCCCGCACACACCTCAGCTCCAGGACACTCTTCCCGGGAGGAACTCTGCTCACAAAGCCCAAGGACCAGACAGAACGGCCCTTCCTCCCCTCACCCACCTGAACCACCCCAGAAAGCCCTGAGCAGAGGCCAGGCCACCCAGCCCTCTGCCATGTATGAACCACCTGGTCCCACACCTTCCGGGTGTCCCAGGCCCCCTCACCTCACACCTCAACACCGCAGCTCTAATTATTTTAAACCCCACATCTTTTTCTTTTTTTTCTTCTTGATCTTTAAAAGAATATCATGACAAAAAAAACCCCACATCTTAAATTCAGATACTCACGGCCAGGCACGGTGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCAGTTGAGCCCAGGAGTTCAAGACCAGCCCGGGCAACACAGCAAGACCCTGTCTCTACTAAAAATAAAAAAAAATTAAAAAACAAAAAACAAACAAACAAAAAAACCCCAGGTGCAGTGGTGCCTGTGGTCCCAAGTACTCAGGAAGCTGAGGCGAGAGGATGGCTTGAGCCCAGGAGTTGGAGGCTGCAGTGAGCTACAGTTGCACTGCTGCACTCCAGCCTGGGTGACAGAATGAGAACTCTGTCTCTAGGGGAAAAAAAAAATCGGAAACTCGGGCTGAGAGAGGGCAGGTCACCTGCCAGAGGCCCGCAGGTGGGGCTGGCCCTGCTGCACCTGGAGGGTGGTTCTCTCCGAGCCAGCCTTTCAGGTAGGCACTGTGACTGTCCCCACAGCACAGGTGAGAAAGCTGCATCACAGAGAACTTGTTAAGTGACTTGCCCAAGGCCACACAGCGGCCAGGGGTGGAGGTGGAAATCTGAGTCGGGCGGTCTGGCTTCAATGTCAACACGCATCACCGCTGCACCTGGCTGTCCTAGAGATGACTCTCGAAGACATTGTGCAGAGAGAGGTGTGGGGCACGGTGGTGGCCAGAGGAGCCCCAGCCCCTCCCGGGCCTGTCCCCACACGAGGGGCCGCCTCACGCCGCCTCTCTGTTTCTCCCGCCAG
Seq C2 exon
CACCTCTGAGACGTCCCTGTACCAGGTCCTGCTGGGGGCAAGGCAGCTAGTGCAGCCGGGACCACACGCTATGTATGCCCGGGTGAGGCAGGTGGAGAGCAACCCCCTGTACCAGGGCACGGCCTCCAGCGCTGACGTGGCCCTGGTGGAGCTGGAGGCACCAGTGCCCTTCACCAATTACATCCTCCCCGTGTGCCTGCCTGACCCCTCGGTGATCTTTGAGACGGGCATGAACTGCTGGGTCACTGGCTGGGGCAGCCCCAGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172382:ENST00000302641:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATGCTGAACCGAATGG
R:
GCACACGGGGAGGATGTAATT
Band lengths:
347-1728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development