MmuINT0127433 @ mm9
Intron Retention
Gene
ENSMUSG00000050762 | Prss27
Description
protease, serine, 27 [Source:MGI Symbol;Acc:MGI:2450123]
Coordinates
chr17:24179769-24181498:+
Coord C1 exon
chr17:24179769-24179931
Coord A exon
chr17:24179932-24181226
Coord C2 exon
chr17:24181227-24181498
Length
1295 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
AGCTCTGCTCTTCCCATTAGCAC
3' ss Score
5.88
Exon sequences
Seq C1 exon
CCTGTGGGCATCCAAAGATGTTCAACCGGATGGTGGGCGGGGAGAACGCCTTAGAAGGTGAGTGGCCCTGGCAGGTCAGCATCCAGCGCAACGGAATCCACTTCTGTGGGGGCAGTCTCATCGCACCAACATGGGTCCTCACTGCTGCACACTGCTTCTCCAA
Seq A exon
GTAAGTGGCCTTGGCCCTTCCAGCTTCTCACCACGGCTTGGGACAAGACTGAGCCTGTGCACAACTGTTCAGCACCATGAACAGCACCACCATCAGCGCACCCCACCCCCCCACCCCCACCCCATGCCTTGTCCAGTAACACCCACTGTCTTCCAAAGTTTTCCTTTAGGGATCGGGACAGATAGCCCAGTGCACTGACTGTTCTTGTAGAGGACCAATGTTCAACTCTCCACATCTACATGGTGGCTCACAACCTTCTATACCTCAAGTTCCAGGAGATCAACACCCTCTTCTGGCTTAAGCAGGCTCCAGGCATGCACACAATGCATAGACACACGTGCAGACAAGACATTCATACATATACATAAAATAATTAGAAATTTCCCTTTGGGTCCAACCCTACGCCTAGAAGCTGCAACTACTGCCTCAATTCCTGCCCCACCAGCTGCTTGTCAGTGATACGTGGGGTCCTGTTCTAACAGGCCCCCCGACCCCACCCCCCACATACACACACCAATCCAGAGCTCTCTCTCTCTCTCTGGTTTGGGGGTATCAGATAAGCCTAAGATTTGGAGCAGAATGCCCCTCTTCCTTACCTCAGAAGACAGTTTCCCATCCCACACGTCCACGTGAGACACCTGGTCTCAGATTTTCAGGGTCTCCAAACATACCTCTTTCCTCACGGATCTGCAATTCTTCTTTTCCCTTTGTTTTATCCATTATTGTGTGTTTGGGGGGAGGGGCACGTGTCTGGTGTGCTTGTAGAGGGCAGAAGACAACATTTCAGAGTCGTTTTCTCCTGTCATGTTTTTTCAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAAAACTTAGGCATTTGTGCTTGCACAGAAAGCACCTGTACCTGCTGAGCCATCTTGCCAGCCCTTGCAATTATTTCAAAAAGCTCAAAGGTGGTCTACCTGGGGCTCAGAGGCAGGCCTTGGGCTCATTGTACCTCATAGGTTTATGTGTGTTACAGCAGGCTTTTCAGGTAGGACTTAAGTGTCCCCATCTTACAAATGAGGAAACTGAATCACAAGGAATTTGTTGGGTCACTTACCCACGGTCACCTGGTAGCCAGGGAAAGATGGGTGATTTTCAGTTTTTACAGCCTTTATCACGAGTGCAAAGAGATGTGTCAGATACTGCAGTGGACCAGAACCACCTACCCATTGTGGGTCCCTCCCCTCATGGAGGAGGGTACCCACAGCAGCTCTGCTCTTCCCATTAG
Seq C2 exon
CACTTCGGACATATCCATATACCAGGTCCTGCTGGGGGCACTGAAGCTGCAGCAGCCAGGACCACACGCCTTGTATGTCCCCGTGAAGCAGGTGAAAAGCAATCCTCAGTACCAAGGCATGGCCTCCAGTGCCGACGTGGCTCTGGTGGAGCTGCAGGGGCCGGTGACCTTCACCAATTACATCCTTCCTGTGTGCCTTCCTGATCCCTCGGTCATCTTTGAGTCGGGCATGAACTGCTGGGTCACTGGCTGGGGCAGCCCCAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050762-Prss27:NM_175440:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=80.0)
A:
NA
C2:
PF0008921=Trypsin=FE(38.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTAGAAGGTGAGTGGCCCT
R:
CCGACTCAAAGATGACCGAGG
Band lengths:
342-1637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: