HsaINT1028636 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9202319-9202684:-
Coord C1 exon
chr12:9202525-9202684
Coord A exon
chr12:9202372-9202524
Coord C2 exon
chr12:9202319-9202371
Length
153 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCGGAGAACTACTTTTCCAGTAA
3' ss Score
0.7
Exon sequences
Seq C1 exon
CTCCCAAGGATCTCAGCCTCTTCAGAGGTGGCATTCCTTAGCATCCAGATAAAGGGGCCTACGCAAGATTTCAGGAAGAGGAACACAGTTCTGGTACTGAACACCCAAAGTCTGGTCTTTGTCCAGACAGACAAACCCATGTATAAACCAGGACAGACAG
Seq A exon
GTAAGTAGGGAAATTCCACTGTTTGGGGCAACACTGAGAAGGGCCACCTGAACAGCCAAAGTCTCCATTATCCTAGCCCCGTAGCCTCCTGTCTTATTACCCAAATTACCTGCTTTATCATGTCTGAATCTTATCGGAGAACTACTTTTCCAG
Seq C2 exon
TAAGATTCCGTGTTGTCTCCGTGGATGAAAATTTTCGCCCTCGAAATGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=29.6)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAAGGATCTCAGCCTCT
R:
CAGTTCATTTCGAGGGCGA
Band lengths:
213-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains