HsaINT1028638 @ hg38
Intron Retention
Gene
ENSG00000126838 | PZP
Description
PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
Coordinates
chr12:9200364-9201060:-
Coord C1 exon
chr12:9200892-9201060
Coord A exon
chr12:9200449-9200891
Coord C2 exon
chr12:9200364-9200448
Length
443 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
CCTATTATCTCTATTAACAGTGC
3' ss Score
7.15
Exon sequences
Seq C1 exon
AACCCAAGAAGAAATCGAATTGCACAATGGCAGAGTCTCAAGCTAGAAGCTGGCATCAATCAGTTGTCCTTTCCCCTCTCATCAGAGCCCATTCAGGGCTCCTACAGGGTGGTGGTACAGACAGAATCAGGTGGAAGGATACAGCACCCCTTCACCGTGGAGGAATTTG
Seq A exon
GTATGGATTATGGAAGATGAAAAAGGCATAACATTTTGGTTCCTAGAGTGTGAGCTCACTTAGATCCTTTGAATTTCCTGTAGATATGTTGAACTTGCAGTAGAGTCAGACTTACTGCTTCTAAGACCATTAGGACGGTGTGAACACAGAAGCTCATAAGAGCTTGCTGATTTTCAGTAGCAAATTACGCTTTGCCAAGTATGAAACTTCTTGTTTCAGTGAAACCACCATCATTTGTTAACGTCACTGAGACCCGCTGTGCTCAAGAAGTCAGTTAGATTCTGCATGAATTGTTAAACCTTACCATCTTAAAGTTGATACATTGGAAAGTAAATCTAACATTCAGAGTGTTATTTTGGGAAAAATTATAGACATACTGAAATTATTTGTATTTCCAATAAATGTTTACCAACCTTCCTTATTCCTATTATCTCTATTAACAG
Seq C2 exon
TGCTTCCCAAGTTTGAGGTCAAAGTTCAGGTGCCAAAGATAATCAGTATCATGGATGAAAAAGTGAACATAACAGTCTGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126838:ENST00000261336:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(55.3=91.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAAGAAGAAATCGAATTGCAC
R:
TCTCCACAGACTGTTATGTTCACT
Band lengths:
254-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains