HsaINT1028829 @ hg38
Intron Retention
Gene
ENSG00000136828 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr9:127212944-127214842:+
Coord C1 exon
chr9:127212944-127213049
Coord A exon
chr9:127213050-127214750
Coord C2 exon
chr9:127214751-127214842
Length
1701 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
ATGGTTTCTCTACCCATCAGGCA
3' ss Score
5.71
Exon sequences
Seq C1 exon
TATAAATCCACACCTGGCAAAAAGGTTTCCATCGTGGGCTGGATGGTGCAGCTGCCCGATGACCCCGAGCACCCAGATATCTTCCAGCTGAACAACCCTGACAAAG
Seq A exon
GTAGGCAGCAGGCCAGAGCTGGCGCCTGCAGCTGCTCTCTGCCCATTTCCTCTCTTGCACAGCGTGCATTTTGAAATTATTAGGAGCTTTTGAGGCTGCTGCCTTCCCTTTGCTTTAGATTCTGACGTTCATGGGGTCCATGCTAGTCCACAAAAGCTGCATAGATCATGGTTGGCATGTCCATTGAGAAGGGTATGAGGCACAGGGTGCTGGAATCCTTTTTGCAGCCTTACCTATGGCTGCTGGGGCCCATCACTCCAGGAGCTGTAGTCTTACGGTCTTGGAATAAATAGTAAGGCTGGATGAGGCAGGGCCATGAGGCTGGAAGGGTCTTGGCTCTGGGGAGATTTCAGGGATCCCCTCACATGCCTGTGCCATAAGACTCTGGCAGTGTCCAGTTCCAAGGCCAACTCAGAGAAGAACCCTTTTAACTTCCCAAAGCTCCAGCCTTCTCTAGCTATCTCCCAGTTCCTCCCGGTTCCCACTTCATGATCATGCTGGGAAGGAGGAGAGATTCTGGATGCCATCCTGTCCAGTAGCCCTGTCTTCACTGACATTCAGAACAGACTATGGTGGGTCTCCTCAGTAACCCATGTCACATGACAAAAACCCAAAATTGCCTGGGTCAGTTGGATTCCAACCAGGCAAACTGATTTGGGCTGGAAAATCCCCACGCATTTTCACACCTTAACAGGAATGTTCTACTGTAGGGTTCATGAACACACAAATCACCTGGGGATTGATTAAAATTCAGATTTGGATTCAACAGATCTGGGGGTAGAGACCAAGATTCTGCATTTCCAGCAAGCTCCCGGGCGATGCAGATGGCAGTGCTGGTGGGGAGACCATGCCTTGAGTGTCAGGCTCTAATGTTCTTAGCTGAGAAGCAGAGAAACAAAGGGAGCCTCCAGGAGCCTGGAATGGGGAAGAGATAAATTACCAAGTTCTCTGCTCCGTGTCTGAGTGACTGAAGCCACATTTGTTGCACACATGTGGCAGTGTGTCCTGAGTTTGGATACCATTTGAGTTTCTTCCTCCCTCAACAGTCTGGACCGGATTAGCAGTGGTTTCTTAAGGAAATGTGACACAAGGGGTGGCCAGGGTCCATGGATGGAATTCAAGAGGTCTGTGAACTTGGGTGGAAAAAAAAAATGCATCTTTGTTTTCAGTTACTTGTGACTACTTCAGTTATGAGTATAAGCATCCATCAACAAAAATGTTAGCAATACCTGTGATTTTTATCTCCAAGAGGAATCACATATTGTTACAGACATTTCAAAATGTCACTTATGCTCATCTCTTTTACAGTGCAGTATCGGACCGTACTAGATCTGTTTTTAGTGCTTTAATATAGAAGCACCTATAGAATTATACTGCTGGTTTGTTTTTTAGTTGTTTAATAACTGTATTTGAGTATTATCGATTTCCTTTGTATTTTATACATTTGGAAACATTATTCTGAGGATTGTCCACAGGCTTAACCAGACAGCCAAAGGCACCATGGCCCCAAAATGGTTACAAGCCATGGTCCAAAGAGACCACTGGAGGGAGCCCTGGAGGCTGCTTTCTCTGCATGTTCCAGCTCACCTGGGGCCGACCTTCCCACTTTAGTTACCCGTGTTTACATTTCTCTTTATGCCAGTCACCAGCTGACCCTCCTACGTGGCCCTCTTCTTAACTCATGGTTTCTCTACCCATCAG
Seq C2 exon
GCAATGTTTACAAGTTTCAGACTGGTTCCCGATTTCATGCAATACTGTGGCACAAGCATTTGGATGATGCATGTAAAAGCAACAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136828:ENST00000259351:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
NA
C2:
PF0016924=PH=PD(22.3=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAAATCCACACCTGGCAAAAAGG
R:
CTGAGGCCTGTTGCTTTTACA
Band lengths:
198-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains