RnoINT0123953 @ rn6
Intron Retention
Gene
ENSRNOG00000016910 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:RGD Symbol;Acc:2319500]
Coordinates
chr3:12186569-12188515:-
Coord C1 exon
chr3:12188410-12188515
Coord A exon
chr3:12186661-12188409
Coord C2 exon
chr3:12186569-12186660
Length
1749 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GGGGTTCCTTTCCATATCAGGCA
3' ss Score
6.48
Exon sequences
Seq C1 exon
TATAAATCTACACCTGGCAAGAAGGTCTCCATCGTAGGCTGGATGGTGCAGCTGCCTGATGACCCCGAGCACCCAGACATCTTCCAGCTGAATAACCCTGACAAAG
Seq A exon
GTGGGTGGCAGACCGGGCTGGAGCCTCTGTTCTCTCTCTAAGCACATGTGTACCCTGAAGCTCTGAGATCACGATTTTCCCTTTACCCTAGGTTTGTGTGGCGCCCTGTCTAGTCCCTCTTGCTGCTTACACCTTGGTTGGTGCTTCCGTTGAGCAGTGAGCGTGACCTTGCCTTTGACTTTAATGGCTCTGTCCTCTCTCAGTCTGTAGCCCAAGGGTCATAGAGTAAATAGCAACCAATGTTAGATGAGGCAAAACCTTGGGACCAGGAGGGTCTTGGGACCTGGTTTTCAGGGACTCTCAACGTAGCTTTACTATAAGACTGCACAGTGTCCAGGTCCAACGGCAACTCAGAACCCACGTGACTTCCAAAAGCTCCAAGCTGATCTTCCCCACTTCCCTCTTGGTCCCTGCTAAAGGGCCTGGTACCATCCTGCCCAGGAACCTTGTCTTCACTGACATGTCCAGCCGTCCACATCCAGCTTCCTTGGTGTCCCAACGTACAAAACAGAGATCTAACAGCAGCCACATAGTTAGACGCTTACCCATGCTTCTACAGTAATAGACATGTACGAGTTCAGAACCACGCACAGACAAGTCATCCGGGGAATCGGGCCACATAAAGCTTGTCTTTGGGGTATGCAGACCTGCCTAGAGACCAAGACATATCATGTCTAACAAGTTCCCTGGGAGGGATGATAGGGGTCCAGTCCAGGGGCCTCTAAGTTTATGTTCTTATAGTTGCAGCTGAGAAGTAAGGGTGCCCAACCACCTCAAGGAGCTCTTTGGGTAGAGAGGCAGTCGAGTGTCAGGCCCTCTGCTCTATATTGGGGTGACTGAGTGTGCGTCACCTACTGCCAGGGCCAGTGAGGTTTTCATTAGGAAGAAAGCTATGCCCGTGCAAGCTCCATGAGCCCTTGTGGCCATGGGGACCACAGGCCACTTCTTTTTGAGCCTAGAGCAGTGGTTCTCAACCTTCCTAATGCTGTGACCCTTAATCGAGTTTGCATGTGGTAGTGACCCCCAGCCATAAAATTATTTTGTTGCTACTTCATAACTAATTTTGCTACTGTTATGAATCACAATGTAAATATCTGATATGCAACCCCCAAAGGGTTCACAACCCACAGGCAGAGGACTACTGGCCTAGAGGAAAGCATTGTCCCCAAGCAGAAGCAATGGGACATGAGGTCAGGGGCCAATGCCACTGATAGAATTAAAGGAGTCTATAAATTAGATAGGAAAAATTGTATCTTGGTTTTCAGTGTCAAGTAGGGTTATCTTCCTTCCATTATGAATGTAAGCATCAGCAAGAATTTCAGAAATTCTGTGGGTTTTGTCTCCAGGAGAAATTCTAGGCATTTCCACAGCAAGCCTGATTGCAGACATCTCAGGACCTCTTTGGTGCTCCTCTTGACATCCCAGCATGGTGTTATATCTGCTGCCAGCTCTAGGATCTAGACAGACAGACAGACTCCCTGCACAGCATGCTGTGTAGGCAGTTCAGTATGGAATCTCAGTGTCAGTGACTTTCTTTGTACTTTATTTCATATGTTTGAAAACACTGGTTTGAGAACTGCTGGGAACCTGGTTGTTAAGGGTCTTAAGCCCAAACATACCTGGCCTGCCATGTGGGCTCACCCTGGCCTATGGCAGCTTTTCTTACTCATACAGACTCATGCCCCCACAGCACACTCAGGCCAGCCCTCCTGCGTGTCCTTCCTAACCAGGGGTTCCTTTCCATATCAG
Seq C2 exon
GCAATGTTTACAAGTTCCAGACGGGCTCCCGTTTTCATGCGATACTGTGGCACAAGCATTTGGATGATGCGTGTAAAAGCAACAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016910:ENSRNOT00000022755:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(31.2=100)
A:
NA
C2:
PF0016924=PH=PD(22.3=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATAAATCTACACCTGGCAAGAAGG
R:
CTGAGGCCTGTTGCTTTTACAC
Band lengths:
198-1947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]