HsaINT1029006 @ hg38
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56569899-56571855:+
Coord C1 exon
chr12:56569899-56569990
Coord A exon
chr12:56569991-56571697
Coord C2 exon
chr12:56571698-56571855
Length
1707 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCTCACTGTTATTTCCACAGCAA
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCTATGGCTTTGTAGATTTTGACAGCCCTTCAGCAGCACAGAAAGCTGTAACAGCACTGAAGGCCAGCGGTGTACAGGCACAGATGGCAAAG
Seq A exon
GTAAGGGTACTACCCCATGTCTGTTCCTCCAAGGGGTTTGTGGTTAGCACCAAAGTTCCAGTTCTAAGGTTTCCAGAGGGCTTAAGAACCATGAAATTGAGTGGGCAAGGGCTATCCGTGGTGCTTTCTAGACAGTCCATGAGCACCCCTGGCTGCTGGAGGAAGATGTATTCAAAGTCTATGGCAGGTAGCTCTATCAGCTCTCTTCCTTTCACCAAGTTATTGGCAGCAAGAAAGGTAAGGTGGCCTCTTCCGGTACTCCTGCTGCTTCCCCGTGTTCCCTATATTATTCACCCTGGCCCCACTTCCCTACCAGACAGCTTGTGGTGGTTTTGCAACATTCTCTGAACAAGTCAATTGTGCAACTCAGAATTTCAGAACAATGCTCTCCACCTCCTAATGTTGTTCCCCATACGGGCTGGGTAGTGGGCTGGGGAGGCAGGAGGGAAGCCACATCAAGGGAGGAAACTGTCTCTTCTCAGATCTGTCTGAAACTGTTGTCTTCACCTAGACTACTAGAAATCTAGAAGCTTTTCTCTCACTTCTTCTGTTAGGTGGGATTGTCTCCTTGCCTTTCTATTTTATTTTATTTATTTATTTATTTTGAGACAGCGTCTCGCTCTGTCGCCCCGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTGCACCTCCCGGCTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCATCACCTCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACGTTGTGATCCGCCCACCTCAGCCTTCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCTGGCTGTCCCTTTGCCTTTCTGAAGCTGTTATGAGTATTATACATAGAGCTTGTGAGGCAGGCCTGCTAGACACCTTTTCTGTAATGGTTAAAGAAAAGGAAAACAAAAGGAAAAGGCAGAAGAGGATTAAGGTTGCTGGTGACCACTGTTTAGGGCAGAGTGACTGCTTAAATTCTTAAAAATACAACTATTGGATGATATTGCCATTTTGCACATTCTGTCCCCTGGAAGGGCTCTCCTACCTCTTCTTCCAGGAGTAAAACCCTCTGACAAAAGCTCAAAGGTTTAGGAGCCTTCAGGGTCCTAGGAGACTGTAGCTTTCAGGGCTCCGTGGTGACACAGTGAACTCTGCATCTGGCTCTCTCCCTGTTCCCTTCTCCCCTCCTCCTGCTCTTCCTCCATCAGGGAGTGAACAGGCATTCCTACTTAGAGGATTCTGCGTGGCTGGAAGAGAAGTGGGGAGGGGCTGCTCAAAACAAGCCAGCCAAGGAGCAAGGCAGTCTGAGGGAATCCAGCCTCTGGGACCGGCTGCTGGGGGAGAGCGGGAATGCTGCTCTGCCTGTTTCTAAAAGAGACAGCCAAACACCATTTATGACTTGTATGATGGGCTTGTATAGTACTAGAAATATTAAATCTGCACTTCTCCCTCCTGGAACTCAATATACAACCCGTGGTAGTGGGACTGGGTGTTAACAAATAGAATAATCTTTGTTTATGTGGGACCCTTCCTATAGTCTCTTTTCTGAAATGTCATTTGTGGGGAGGGCTGAGGGTGGGAGAGGGATAAGAGATGTGAGCCTCATTTTCTCACTGTTATTTCCACAG
Seq C2 exon
CAACAGGAACAGGACCCCACAAATTTATACATCTCAAACCTCCCACTGTCAATGGATGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACCCGTATCCTTCGAGATACCAGTGGGACCAGCAGAGGTGTTGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067:ENST00000262031:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.415
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTTGTAGATTTTGACAGCC
R:
CTTGCAAAGCCAACACCTCTG
Band lengths:
246-1953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains