MmuINT1029671 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128143395-128145764:-
Coord C1 exon
chr10:128145673-128145764
Coord A exon
chr10:128143553-128145672
Coord C2 exon
chr10:128143395-128143552
Length
2120 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTTCACCTTCGTGTCCATAGCAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GCTATGGCTTTGTGGACTTCGACAGTCCGTCATCAGCACAGAAAGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
Seq A exon
GTAGGGTAGTGCCCACCCCCTCCCCAGCCCCATCTGCCTCTCCAGGGATTACAGTCAGCAGCAAAGTGCCAGTTTCAGCTATGTCGGAATGTTGAGGAAAGTGAAATTGATGAGCAAGAATTGTCTACAGTGCTCAAGTGTGTGAGTGTGTGTGTGCATGTGCGAGTGTGTGGTGTTTGTGTGTGTGTGCGCGAGTATGTGTGTGTGTGTGTGCATGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGCATGTGCATATGTGTGTGTGTTCATGTGCACAGCAGTGTGGAGCCACCTGATGTGAGTGATGGTGATTGAACTCAGGTCCTTGCCATCTCTCACCCTCTGCAGTGCTTTCTGGTAGCATCTGGACACAGGCATGACAGGCCAGGGTCCACCTGAGCTGCTAGAGAAGACTGTGCAGTGTGTGGCAAGCAGGAGAGCCAGGCCTCTCGGCACTCCACCCTGGCCCCACTTTCCTAGGACAGATGGTTCTAGTTTTGCAACATTCTCTGAAGCCCAATTGTGCAACTTAGGTTCTGAAGAGTGCTTTCCATGACCTGCCACTGCTCCCGTGGGACAGGGAGTGAGCTGGGGAAGGGGCTGAGGGAAAGGGAGGAAGCTACAGCAAGAAAGGAAGAGAACTGTACCTTCTGCTTTGATTTCCCTAGAGATGAAAATGTTGTATGCTCACTCTCCCCCATGTCAGTCTCTAGAAAGCTAGAAGCCTTTCTGAAATCCTTTCAACCATACTGAGGCACCTTGAATACTCTGAAGAGGCTGATAAGGGTAGAGTTACAGTGGGTTGTACATCACCATGAGGTGCTAGGAATTGAACTCAAGATCTCTCAGAGAGCAGCCAGTGCTTTTAACCATCGCTCTAGCCCCAACATAGCCATTCTTTTCTCTAAAGGTTAAAGGGGAAATGAAGCTGGGTGTGATGTCTCAAGTCATTCCAGCACTTGGGAGGCAAAGATAGTGAGAGTTTGTTTTAGGCCAGCCTGGGCTACAGAGTAAGACCTTGCTTGTCTCAAAAGAGAAAAGGAGAAAGAGAAGAGGAGGAGGAGGAAGAGGAAAAGGAAAAGGAGGGAGAGGAGGAGGAAGAGGAGAGAAGGGCAGGAGGTGAGTGGATTGGAGAGAGTACACTGGCTGTTCTTCCAAAGGTCCTGGGGTCAATTTCCAGTACCCACCCCGGTACCTTAAAGGCATCTTAACTCTAGTTCCAGGGAAGTGCCCTCTTTTGGTCTTTCTGGATGCTTATATGCACACCATACACAGACATACATACAGGCAAAAACAAAAAACAAACAAACAAACAAAACCACCCATAGATGTAAAGTAAAAAATAAATTTTAGGTGGAAAAAAAAGGGAAAGAAACGGAAGTTGAAAGTGGGATTAAGGTTGCTGAAAAGGACTGACTAAAGCAGTGTAATGATTGACAGGCTTGAAAACAGCTCTGGAGTGGGTGTTGTGCACACACCTGTGATCCCAGCACTTGGGAAGGAGACAGAAGGATCAGGAATTCAAAATCAAGCCCTTAGGCAGAACTGTCATTGAGCCCTCCAGGAACCTCCACCCTGCCCCTAGTGCAGCCTCTCCCTGGGGCTCCCAAACACCTTTGGGGTAAATCACTGCACAGCACACCCTGCCCTTTCTGTTTCCTTCCTGCTGCCCTCCCTGCTTCCCTCCCATCCGCCAGTGACCAGGTAGCCCCCTTAGCCGAGTCTGCTGTGGCAGAAGAGAGGGAGAGAAATCATTCTGAACTGTGGAGTTGACAAGTCAGGAGAAAGGAATCTAACCTCAGGGCCAGGCTGCAGGGCAAGAGGAAAACTTGTTCTGCCTGCTTCTTAAAGAGACAGCTGGTAGGTGGCTTGTGTTACTGGATTGTACAGCAGTAGACGTGGTAAATATTATAATCTCTCTTCCTGGACTAGGTGTGTAGTACACGGTGACAGTTCTGGGTATTACAAACAGAAGGTTCTCTGTGTTTGGATCCCCCCCTTAATGCTTCTCTTCTCAAATGTTATTCTGTGCATGAGGGCTGAGGATGGGATGGGGAGCAAGATGTGAGCCTCAGTTTTCACCTTCGTGTCCATAG
Seq C2 exon
CAACAGGAGCAAGACCCTACAAACTTATACATCTCAAACCTCCCTCTGTCAATGGACGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTCATCTCTACTCGGATCCTTCGAGACACTAGTGGGGCCAGCAGAGGGGTCGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types