HsaINT1029009 @ hg38
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56581399-56581879:+
Coord C1 exon
chr12:56581399-56581508
Coord A exon
chr12:56581509-56581832
Coord C2 exon
chr12:56581833-56581879
Length
324 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ACTGTGTTCTTTCTTTATAGGGC
3' ss Score
12.23
Exon sequences
Seq C1 exon
CCCCATCCGATCCCTTGCTTTGCAAATTTGCTGATGGCGGGCCAAAGAAACGACAGAACCAAGGAAAATTTGTGCAAAATGGACGGGCTTGGCCAAGGAATGCAGACATG
Seq A exon
GTAAGAGGACCTCTGAGGAGACAGGAGTACTAACGACATTAAAGTGGAACGGAAATGATCATGGCATGATTTCTGTGAGCTTAGGTGGAAAGCTTGAGAGCTACAGTACGTAATTGAGAAATGCTGGCTGTGAACATACTGCCAGTTTGTTCTCGAGTGTGGCTTTGCGGCCTGCACAATTAGAAAAACTCTGAAACAGCTGTAGTGGGACTTGTCTAGGCTTTAATTTGTTAAACCAAAACATTCCCAGCCTTGGACATTCTGGGCCAGCTCCTATTCTCACTCAAGGGCTCACAATGTGAACACTGTGTTCTTTCTTTATAG
Seq C2 exon
GGCGTCATGGCCTTGACCTATGACCCCACCACAGCTCTTCAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067:ENST00000262031:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.031
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains