RnoINT0125328 @ rn6
Intron Retention
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2558105-2558571:-
Coord C1 exon
chr7:2558462-2558571
Coord A exon
chr7:2558246-2558461
Coord C2 exon
chr7:2558105-2558245
Length
216 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
CGCTGCATTCTTTCTTACAGGGT
3' ss Score
10.15
Exon sequences
Seq C1 exon
CACCTTCTGACCCCTTGCTTTGCAAATTTGCTGATGGTGGGCCAAAGAAACGACAGAACCAAGGAAAGTTTGTGCAAAATGGACGGGCCTGGCCAAGGAACGGAGATATG
Seq A exon
GTAAAAAGATCCCCAAGGAAGCACAAACCCTAAAAGCATTGGAGTTGGAAATGGCACAGCCTGGCTTCTACGCCTGTAGGTGGGAAGCCTGAGAGCAAGATGTACGACTGAGCCCTAACAAGTGTCTACTCGCTCTTCAGTGCAGTCCCCAAAACCTGTAGTGGGGCATATGGGTACTCCGGGCTGGCAATATGGACGCTGCATTCTTTCTTACAG
Seq C2 exon
GGTGGAATGGCCTTGACCTATGACCCCACCACAGCTCTTCAGAATGGGTTCTACACAGCTCCTTACAGTCTCGCCCACAGCAGAATGCTCGCTCAGTCTGCACTAGCCCCGTATCTTCCATCGCCCGTGTCTTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076:ENSRNOT00000048848:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=NA C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGACCCCTTGCTTTGCA
R:
GTAGGAAGACACGGGCGATG
Band lengths:
245-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]