MmuINT0132951 @ mm9
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127574717-127575085:-
Coord C1 exon
chr10:127574976-127575085
Coord A exon
chr10:127574764-127574975
Coord C2 exon
chr10:127574717-127574763
Length
212 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
3' ss Seq
CACTACCTTCTTTCTTACAGGGC
3' ss Score
9.88
Exon sequences
Seq C1 exon
CACCTTCTGACCCTTTGCTTTGCAAATTTGCTGACGGTGGGCCAAAGAAACGACAGAGCCAAGGAAGATACGTGCAAAATGGACGGGCCTGGCCAAGGAACGGAGACATG
Seq A exon
GTAAAAAGATCCCCGAGGAAGCACGAACCCTGAGAGCATTAGAGTTGGAAATGGCGCAGCCTGGCTTCTGTGCGTGTAGGTGGGAAGCTTGAGAGTAAGATGTGTGGCTGAGCCCTGGTGTCTACTCGCTCTTTAGCGCAGTCCCCAAAACCTGTCATGGGACATGTGGGTATTCTGGGCTGGCAATATGGACACTACCTTCTTTCTTACAG
Seq C2 exon
GGCGGTATGGCCTTGACCTATGACCCCACTGCTGCCCTTCAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-Rbms2:NM_001039080:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTCTGACCCTTTGCTTTGC
R:
CCATTCTGAAGGGCAGCAGTG
Band lengths:
156-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: