HsaINT1029126 @ hg38
Intron Retention
Gene
ENSG00000214022 | REPIN1
Description
replication initiator 1 [Source:HGNC Symbol;Acc:HGNC:17922]
Coordinates
chr7:150369671-150370884:+
Coord C1 exon
chr7:150369671-150369868
Coord A exon
chr7:150369869-150370759
Coord C2 exon
chr7:150370760-150370884
Length
891 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGAG
5' ss Score
0.88
3' ss Seq
TTGCTTCATCTGTTAAACAGGGA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG
Seq A exon
GTAGAGTCTGGCCTTTGCTGTGCTCCCAAACCACGCCACAACAGGGGTGCACGGGCGTCCCCATCCCGGCGGAAGGAAATGGCCCTTTCTCATATCCTGGGGTCTTCCCTGTGCACAGTCTGACACTGGGAATGAGTGACCTTTGTGTTCCCTGAGAAGAGAGAGTGCGCTCTAGGGAATTTAGAAGGATGTGTCTGGAGCTTGTGAGCAGGCACAGAAGGGCCCTTAGGAGCCTAACTGCTTCCTTCCTCCTTCCGCGGAGGAGGCTCCTGTGCAGGAATCTGGGCTCCCCTGAGCTGTGGAAGAGCTGAACATGGGGCAGCCCCTGGCGAGGTTGGGGCAGGACCGGGCAGGGGACTGAGATTGCAGTCTCATCTTCCCTCCCCTTCTATTGCCCCAGTAATCTCCAGCACCCCGAGGGAGGCAGAGCCGGTGATCAGGCCCCGAGGGCAGCAGGCTGTGGGTGTTCCTTGGATTCAGGGAGAGCCTTCCTTCCTGCAATGTCCTAATTTGTGTGGGTGGAAGAGGGCAGGCGGGCAGAATGGGGGCACAGTCTGGGCAGGCGGTGGTCTGGCGTTAGACTGCCGGGAGTAGCACCCAGGGCTCTGCTCCTGTTCCCCGAGAAGGGCTGTTCTCACTTGTCCTCCAGCCTCCTACGGAGACTGCAGTTAGTGATGCTGAAAGTGCCTCCCCTGTGGGGCTAGGAATGAAAAGCTATAGACACCTTTTTCTCTGAGATCTTTGCAAACCCAGGCGCTTTAGAGGAAAGAACACTGGCCTGGGAGTTTAAAGACCTGTTCCCTAGTCTTGATTCTGCTGTTGGCTTACTGTGTCACCTTGGGCAGGTCTCGTCATCTTTGATGTCTCACAGTTGCTTCATCTGTTAAACAG
Seq C2 exon
GGAGCTCAGTGTCTGTTTGTCCAGCTTCTCAGAGTTGCTGTGCAGCTCGGATGTGGCATAGGAAACAGCAGACACAGGGAGAGGGCAGCATAAGGCACTGTAGGGAGCAGTGGCCACATTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214022:ENST00000479668:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=NA C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTGGCCTCTCTGCAG
R:
AGAAAATGTGGCCACTGCTCC
Band lengths:
319-1210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains