HsaINT1029229 @ hg38
Intron Retention
Gene
ENSG00000159496 | RGL4
Description
ral guanine nucleotide dissociation stimulator like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr22:23693759-23694450:+
Coord C1 exon
chr22:23693759-23693974
Coord A exon
chr22:23693975-23694346
Coord C2 exon
chr22:23694347-23694450
Length
372 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GCTCATTCTTCCCTCTCCAGGAG
3' ss Score
9.98
Exon sequences
Seq C1 exon
GAGCTGTTCAAGAAGGTGGTGCTCCACGAATGCTTGGGCTGCATCTGGGGCCAAGGACATCTGAAGGGGAATGAGCACATGGCACCCACAGTTCGTGCCACCATCGCACACTTCAACAGGCTCACCAACTGCATCACCACCTCCTGCCTCGGGGACCACAGCATGAGGGCCCGGGACAGGGCCAGGGTGGTGGAGCACTGGATCAAGGTGGCCAGG
Seq A exon
GTAAGCTATGGTTGGGCCTGGGGATTCCCTCTTTAAAAATGGGGAACTTCCTCTTCTCCTCCATCGGCTTTCAGGATCGGCATCTGTATCTCTGGCCTGGACCCTGCACATCCCCTAGGCTCTTCTTGCCAGAGCTTCACTCACCTTGACTCCCACGGCCCAGTGGTGGCTGCTCACTTCCGACCTGGGGTCTTCCTTGGGTTGAACTAAAATCCTCCTAGATGAGTGACATCCACTCGGCCCCAGGTCTGCCCTCCTGAGGCTCCCCAGGCCTCTGCTTCATCCAGGAGGGGAGATCTCAGCAGAGGGGGCTGAGGCTGTAGTGGGCCAAGCTCCAACTCTGAACCGCACAGCTCATTCTTCCCTCTCCAG
Seq C2 exon
GAGTGCCTAAGCCTCAACAACTTCTCCTCGGTGCACGTCATCGTCTCTGCTCTGTGCAGCAACCCAATAGGTCAGCTACACAAGACGTGGGCAGGAGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159496:ENST00000441897:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(34.1=100)
A:
NA
C2:
PF0061714=RasGEF=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTCAAGAAGGTGGTGCT
R:
CTGGACACTCCTGCCCACG
Band lengths:
318-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains