RnoINT0123941 @ rn6
Intron Retention
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7122237-7122728:+
Coord C1 exon
chr3:7122237-7122452
Coord A exon
chr3:7122453-7122624
Coord C2 exon
chr3:7122625-7122728
Length
172 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGC
5' ss Score
7.26
3' ss Seq
CACAGACTCCTTGTCCCCAGGAG
3' ss Score
6.82
Exon sequences
Seq C1 exon
GAGCTATTCAAGAAAGTTGTGCCCTACCACTGCCTGGGCTCCATCTGGTCCCAGCGGGACAAGAAGGGCAAGGAGCACCTCGCGCCCACCATCCGTGCCACTGTCGCCCAGTTCAACAACGTGGCCAACTGTGTCATCACCACCTGCCTTGGGGACCAGAGTATGAAAGCTTCGGACAGGGCCCGGGTGGTGGAACACTGGATCGAGGTGGCCAGG
Seq A exon
GTAGGCTATAGGGGGGTCCTGGGGACCTCAGGGCCACACAGCTGGCATGCACTCTCCTGGAACTGTACACTTGGGTGCTGTGTGAGCGTGTGTCCCTGGCATGCCCTCTGGGAGCTTCCTGCCATTAAGGAAGTTCGTCCATGGGCTCCACTCACAGACTCCTTGTCCCCAG
Seq C2 exon
GAGTGCAGGGTGCTCAAGAATTTCTCCTCCCTCTACGCCATCCTCTCTGCCCTACAGAGCAATGCCATCCACCGCCTAAAGAAGACATGGGAAGAGGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219:ENSRNOT00000013809:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(33.0=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTGTGCCCTACCACTGC
R:
GAGAGGATGGCGTAGAGGGAG
Band lengths:
251-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]