HsaINT0137012 @ hg38
Intron Retention
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:HGNC:9842]
Coordinates
chr9:133106645-133107300:-
Coord C1 exon
chr9:133107085-133107300
Coord A exon
chr9:133106749-133107084
Coord C2 exon
chr9:133106645-133106748
Length
336 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGC
5' ss Score
7.47
3' ss Seq
TCCTGCTCTTCCCGCCCCAGGAG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAACTGTTCAAGAAGGTGGTGCCCTACCACTGCCTGGGCTCCATCTGGTCCCAGCGGGACAAGAAGGGCAAGGAGCACCTGGCGCCCACCATCCGCGCCACTGTCACCCAGTTCAACAGTGTGGCCAACTGTGTCATCACCACCTGCCTCGGGAACCGAAGCACGAAAGCCCCAGACAGGGCCAGGGTGGTGGAGCACTGGATCGAGGTGGCCAGG
Seq A exon
GTATGCCAGAGGAGGGGCCTGGGCCCCCACTTTGGCTTCATCTGTTCTCAGGTTGTGGTCTGCAGTCCAAGGCCCTGTACAGGCCCCAGTCTACCCTTCCCAGGGGCATGCTGGCCTTGACTCTCCCAGCCCACTGCCTGGATGCTCACGTCTTCCTTACACTCTTTCCTTGGGTTGAGCTAAAATCCTCCTGTCACCCCCGGGTCGCAGGCGTGCCCTCTGGGGACTCCCTGGGTGTCTGTCTCATTAGGAGGGGAGGCTTGGCCAAGGGGGACTGAGGCCAGGCAAGCTGGGAGCTCCAGCCCCACCTCATGCCTCCTGCTCTTCCCGCCCCAG
Seq C2 exon
GAGTGCCGGATCCTCAAGAACTTCTCGTCACTGTATGCCATCCTCTCTGCCCTGCAGAGCAACTCCATCCACCGTCTGAAGAAGACGTGGGAAGACGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271:ENST00000372050:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(33.0=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCAAGAAGGTGGTGCC
R:
CGTCTTCCCACGTCTTCTTCA
Band lengths:
311-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development