DreINT0126456 @ danRer10
Intron Retention
Gene
ENSDARG00000071213 | rgl3a
Description
ral guanine nucleotide dissociation stimulator-like 3a [Source:ZFIN;Acc:ZDB-GENE-101130-1]
Coordinates
chr6:7986106-7989525:-
Coord C1 exon
chr6:7989277-7989525
Coord A exon
chr6:7986210-7989276
Coord C2 exon
chr6:7986106-7986209
Length
3067 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
TTTTATTTGTAACATTACAGGAG
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAACTTTTTAGCAAAGTGGTCCCATTTCACTGCCTTGGCTGCATTTGGTCTCAAAGGGACAAGAAGGAAAACCAGAATCTAGTGTCCACAGTCCGTGCCACCATTGCTCAGTTTAATGTGGTCACTAACTGCGTTATCACCTCGCTGTTGTGTCCTCCTGCCACCTCCCCTCCTGGATCCCCGTCATGCCATCGCAGCAGCCCTACATACAGAGCAAAGATTATCGAGAAGTGGATCTCTGTGGCTCAG
Seq A exon
GTGTGTATGAAGATGAATCAATATAGGCGAATATTGTTTTGTGAACACATAATTAAGCACATAATCAGTTTTTAAGCCTGTACTAGAGTAGCATACATGAACTTGTGACATAAACTTTGTTACCAGTACTATATATTAATATGTGCAATGCACTTTAATGTTGCGTCCCAATTCGCCTACTTGTACTACGCCCTGCACACTTTTGTGAAGAAAGATTGAGTAACAGATGAGTATGCAAGCTTTGGCATACACTACTTTCTTATGAACAAACCGTTACGTTGCTTACATGCCCTGTAAATCATATTGATCATCCACATTTCTTTCATATTTAATTTCCTACCTTATCGAAGAAGCAGTAGCAGGTTAATCTGCCGTTCACGAGTCTTTCATGCAGAGATATTTCCTCAGGTCTTTAGATAATTGTGCATTTAGTGGTTAATGTCCAAGCACATCTTTATAGTAGTTTCTATTGTTGTTGCAGATGAAATATAATACAGAAAATATGAATTAGATATTAATTATCAGTCATGCAAACATTTTTACCAAAGCCTCACTACTTGATGTTTGGTCTTATGCATCTGCCATATTTGTAGTTTAAATCTTTTACCCACATTTGTAGTTCTAATCAAATTCTCATTCAACACGCAGTGTATTGTGGGCAATAGGGCTATCATGATAACATAAATTCATGTCGCGATACTATCCCAGCGGAAGTATCAAGCTACTAAGTTGTATCGCTGTACTGTATTAATTAATAATTCACATTTGTAATATGAAGTCAGCTGTCAGAAATACTATATTTTACAGAATAATACTTAAATTTAATTCATGATTCCCTTATTATTGATTTTTTTTTTTAATTTTACACAGTTTTGCAGCCTGTAGCCTGATTTCTACTTTCACCTGGCGCCGTGTCGCTGACCTCCGATGACTGCGTGTGCACCTCACGAAATAGACGAGGCTGTTGTACTTGACTCGTTCACCATTGTGATATTCTTTAAAATGACAGGGGGCGCTCAAAAGAAACTGACCGCAAAATCAGATGGATAAACACAGAAGTAGGAAGTTTACGGAACTTCGTCATATCATTAATATTATTGACGATTTTTAAACTTAAGTATTTTTATAAATAGTTTTAATGATTATAAAGATTTAAATAACCATTCAAGATTTTTTTTTTTAAATCAAACTTAATGCATCACTTGCTTTTGTTCATGTCTCGAACAGTTCTATTATAGTTTAATAAAATATTAATGACAACAGAACATGGGTTGCTGTACAAATATATATTTTAATTATGGAAATAATAAAAGCAAAAAAGGTATACTTACTACAAAATACTGAGGTTTTTTTATTAAGCCCACTCCACAATTGACACATTACTGTCTGGCTAGTTTTTGTCTTCCTTATATGCTAAAAAGGAAATAATGGTCCAACATTCCTGACCATTATCACCAATATAGAATAGAAAAAGAGGCCATCAGTATATTGTAAACTGATAGGTTCAAATAAAGAAATAATTTGTTACTTTTAGTTTTGTAACTATTAAATAGTTTTAAATTTAAAATTGTAATGTATACATCAGTATAAAACCTATAAATGGTGGAAAAACATAGTATTTAATTGTTTATAAAAACTATCTGGGCCTCCCCTTCTGCCATGGCCTCTCTTTTTGTTTTTAACAAACTTATCCCTCAGGTTTTTCCAAACTTTTTAACAAAAGCTTCCCCCTTTCCCACTGTTGCAGTTTCAAGCCAATATTTATTGGCCATCTCGTTATCCCTATGATCACGCATGGACGGATCATAAAGGCCTACCTGTTCAGACAGAATATCTTCAGACCGATTCATGTTCACATCAAATGAAATGCGGCGGTGAACTTTTCGCTCAGGTCTCAAAAAATTATGTGCACTTTGCCAGCCGAAATCATGTCGTGCACGCCAAAATCGAACTTCCGCAAACACCACAGTGACCTCACATTCGCCGTGTGCACTCAAGCGAACACATTAAGTTTAAACCATGCTTTAAAAGGCTCCACAGACTGATAAAATGAAAATAAAATAAAGTTTATAATATATATTGTCGTATATACATATAATAAGTTGTATATACACATCAAAAATTGTGTTGTATTGTTTATGAGCCGGCTCAAATGTGTGAGCATTTTAGGGACTTTTCCACATGCAACATTAACTATTGTAGAACCGTTAATGATGATACTACCATTTAACTACAGTGGCACTGCCAGTATTTTGGAGCCAGAATATCACAGAACTACCATAATACTGGTAAACTGTGTTAAGCTAGTGCAGGGGTCACCAATCTCAGTCCTGAAGGGCCGGTGTCCCTGTAGGGTTTAGCTCCAACTACAACACACCTGCCTGGATGTTTTAAGTATACCTAGTAAGACCTTGATTTTTTTTGTTCAGGTGGGTTTGATTAGGGTTGGAGACAAAATCTGCAGGACACCGGCCCTCCTGGAGTAAGTTTGGTTAGACTATGGGCGGGTCTACCGTCTGAATTTCTATCAGAAATAGTAGACCATCCAGGAGCCATTGGCCTACTCTTTCCATAGTATTATAGTGGTAGTAGTGGTATTGCCAGTACATACTACTGTTTAAGATATAGTATAACAATTCTATTTTCAAACACTATTTAGGATGGATAGTACACAAATTGGGATGTAGCATTAAATTGAAGATGAGCAGCAATAGTTGAAAAAATAAATCTAGAAAAATCTAATCGCACACTCAGCTTGCACATATCATTTCAGTCTTTTTGTCCACAAAATGTCAGCACTGAACCTGACGTTGATTAACAATCTGAACAGAAACGCTGGAGACGGAACAACAAAAACGGATGGCGAAATGTGTGTACCACCAACCTTTAGTTTAAAGATGCAGAAATGTAATCACTTATAAATTTTGGAGAACAAATGTAAGGACAAAGATGAATCATTCGATTGTGCATGTATCCGAATGTTTGTGCATGCAAAAAAATCATAAGCCCAAGTCTTTTTATTATGATTATTTTACACTGATTTGTTATTTTATTTGTAACATTACAG
Seq C2 exon
GAGTGCCATCAGCTCAGAAACTTCTCCTCTCTAAGAGCCATCCTGTCTGCTCTTCAGTCAAATGCTGTCTACCGGCTGAAGAAAACCTGGGCTGTGATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071213:ENSDART00000151358:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(35.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]