HsaINT1032149 @ hg38
Intron Retention
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52289822-52291557:-
Coord C1 exon
chr13:52291507-52291557
Coord A exon
chr13:52289984-52291506
Coord C2 exon
chr13:52289822-52289983
Length
1523 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGT
5' ss Score
7.43
3' ss Seq
CATTTATTTATTTGTTGTAGAAT
3' ss Score
7.91
Exon sequences
Seq C1 exon
CAGCAGGATTAAGAAAATTGTTCATTCAATTGTGTCATCCTTTGCAGTTGG
Seq A exon
GTATGTGAGACATAGAAAACACCATGTATTAAATATACCTGAGACTTAATGCATAAAAAACACCACGTATTAAATATATCTGAGACTTGGCCAGGTGCGGTAGCTCACGCCTGTACTCCCAGCACTCTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCTAACACGGTGAAACCCCGTCTCTATTAAAAATAAAAGAATTAGCCAGGCATGATGGCGAGTGCCTGCAATGCCAGCTGCTCGGGAGGCCTAGGTGGAAGAATCGCTTGAACCTGGGAGGCGGAGATTGGAGTGAGCTGAGATCACACTATTGCACTGCAGCCCAGGTGACAGAGCGAGATATATATATATCTCGCTCTTTCAATGAGAAAGACTGAAATAAAAAACAAAACCAAAAAGCATTTCCTGTCCATCGGTTTCTAAGTAGCCATGTGCCCCATCTAATGTAATCTAATTTATCATGGAAATTTGGTTTAAGCTGGACTTTAAGACTTGCAAAGAAACGGCTTTTGTATAAGATTAATAGTAACATATTAATATTATTTTTCTTCCATCTGCACAAGTAAAGTTAATGAAAATCGAATGATAAAATTCTATAATTATAAGTAAAGTGTTTTATTAAGTACCTTATACATCTAGAATTACTCTTTAATTCTGGAAACAATTTACTCAGACTCTTCTCTACGTAAGAGTAAGATTTCATACTATGATATAGATTTACGCAATATGATATAGATTTACGCAATATAATTGTTTCCTTTTGAATTAATGATATTTTAACTTGAGCTGCAACTTTTTGAAAAGTACTTTGAAGATGAATTCATCTTCATAGATTAAGCAAATAGTATAATCAATTTATGGGGAATGTATTTAGAATATGTAACAGCAAGTTTCAGGAGGTACCTTAGAGTTCAATACTATAAATATTTATGGAATTGAATTCTTTCTCATGTACCCATCACTGTACTAGAATCGCCCATAAATATGTAATCATGTACTTGCTGAAAATGTCACTGACAAAAAAATCTTGGTCTTTTAAGAGCTTATGTTACTCATGCTTTCATTTGGTTTTTATTAATAAATCCTTAAGAATTATCCAGATTAATAAGATTTTATTTTTTATGAGAAATGGGTGTAAACTTCTTATGAAATTCTCAAATTTTAAGAAGAGTTTACAAACAGACACAGGCAATTTTAGTTCAGTTTCACTTTTCTCTCTTGAGGTGTTAGTCTGATGGATCTGCTATAAAAGGGCATGATAACGTCTTGTGAAGTGGTTTGGTGGGAATTTTATTTATTAAGAACTGCTTCTATTGGGTGAAAACAGTGATTTTTCTGAGATTCTATGACATTACAGTTTTTCCTGCCACTGGGCAGTTTAATACTAAATAATAACATTTTGGTACCCGATCATTGGCCTAAATATAGTATAACTATAGGGACAAAAGCCCCTTTATCTTTGTTGTTACTTACTTATTTATTCATTTATTTATTTGTTGTAG
Seq C2 exon
AATATTTGGAGTTTTCCTGATCTTGTTGGATGTGGCTCTGATCTTTGCTGACCTAATTTTCACTGATAGCAAAGTTTATATTCCTTTGGAGTATCATTCTATTTCTCTAGCTATTGCTTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576:ENST00000451298:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGATTAAGAAAATTGTTCATT
R:
ACAAATACTCGAAGAAGAACATCCA
Band lengths:
207-1730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains