RnoINT0155108 @ rn6
Intron Retention
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74617093-74619076:-
Coord C1 exon
chr16:74619026-74619076
Coord A exon
chr16:74617255-74619025
Coord C2 exon
chr16:74617093-74617254
Length
1771 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACTCTATTTGTTTCTTTTAGAAT
3' ss Score
10.07
Exon sequences
Seq C1 exon
GAGCACAGTTAAGAAATTTGTGCATTTCCTTGTGTCCTCAGTTGCCTTCAG
Seq A exon
GTATGTGAATGTCTAACAGAAGTAATTAATATCTATGACATTTTAATTTTAAAAGCTTAATGAGACAGGACCTCCAAAAACCAAGACAGAATGAAGTAAAAGAATGTCCATTGTCAATGTCACTAATTAGCTCATGAATCCACACTTAATGTGGTCTAATCTGTCTTAGAAGTTCGGTTAAAACTGAACATTAAGATGAACAAAGAAATAACCTTTGCTCAAAACTAAATCATCACATATTAATATTTTCTTACTCAGAAATGTAAAAAAGTGAAGCATGTACTCTGTAAGTGTAAATCCTATAATTGTAAGCTAAATCTTCTATACACTCAAAATTACTCACTCCCAAAACTGTTTTACTTAGATTTCTTTTCTACATGATGACTTAGATTTATATGATGTAATTACTTCCTTTAAAATTAATAATTTATATGTGTATGATGCTTTACCTATTAGTGTAGGTGTGTGTACATGTATTTGCAGGTGTGTGTATCTGTGTGTGTGTATAACTATGTGCGTATGTGTGTCTCTGTGTGTGTCTGTATCTGTTTGTGTGTGTATGTTTGCATGTGTGTGTGGTGTGTTTGTTTTTATGTCTCTGTGTGTATCTGTATGTGTTTGTCTCTCTGTGCGTATGTCTGAGTGACTGTATGTTTGTCTGACTCTGTGTGTATGTATGTGTGTGTGGTGTGTTTGTGTGTGTATGTCTGTGTGTCTGTGTGTGTATTCTTTTGTGTGTGTATGTGTATGCCTCTGTGTTTATGTTTGTGTGTGTGTCTGTTTCTGTGTACAAAAGGCTACAGATATACATTGGGTATCTTCGGTATCTTGTCATTTTATTCTTTTTAAATATGGCCTCCCATTGGACATAGTGCTCACTGATTAAGCTAGGTTGACTGGTCAATGAGCTCCAGGGACCCTTCTGTTTCTGCCTCCCTAGAGCTGGGGCTACAGGTGCTGTACTGCTCCAAACATGGCATAGGTGCTGAGGATGGACCTCAGGTCTTCAAACTTGAGTGACAGGTGTTTGACTACTGAGCTATCCTGCTAATTCCAAAAATTAATAATATTTCAATTGTCTAGTTGATAAAAGAAAAAATCTTTAAAGTTGAATTGATTCATCTGGTAGTTTAGGGAAATAGTGAATTTATAAGGAGGGTTTTTTTTCCTTTGAAAGTATGCAAGAAAAGGTGTAGGGACACTTAAGAATTCAAGTAATCATGCAAATATTTATGGGATTGAATTCTTTCTCATGCGTCCACCCTGTGAGCAGGATCCATGTGTGCACCCATGAGTATAATTAATCGGGTTTTTTTAAAAAATTTCACTGAGAAAAACTTCTTACTGGTTACAGCATTTTTAAAGGGAATATAATACCCATGTTTTCACTCCCTTTTGTTGCTAAAGTCTTAAATATATTTGAATAAATGTGATTTAATTTATTTTGAGAAATTTGTAGAACCTCCTTAATGAATTCTGAGCATTTACAGAGTTTATACCAAGAAGCTTGCGATTTTAATTCAGATTTGTTGTTCTAGCTTGGAGCACTAAATCACATCCGTAGTAGGGAGGGGCTTGGTGACACTTTACCTCCTAACCACTACTTGTATTTGGTGAAAACTGAACTTTCTTTTAAAGATCCTAGAGGAACATTGTTCTGTCTTCCATAGGACAATTTAGGTCTAAATAAGGACTTTGGGAACATCTGGCCATTGGCTTTAATATTGTGTAACTATGGAGGTAACATCTCCACTCTATTTGTTTCTTTTAG
Seq C2 exon
AATATTTGGAATACTCCTGATCTTTCTGGATGTATTTCTTGTGGCTATCGATCTACATGCCACTGAAAAGAATATTTATATTCCTTTGGAATATCGGGCCATTTCTTTAGCTATTGCTTTATTTTTCCTTGTGGATGTTCTTCTCCGAGTGTATGTAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837:ENSRNOT00000034670:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(20.6=38.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTTAAGAAATTTGTGCATT
R:
CCTTCTACATACACTCGGAGAAGA
Band lengths:
211-1982
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]