HsaINT1036199 @ hg38
Intron Retention
Gene
ENSG00000237781 | RP11-54A4.2
Description
NA
Coordinates
chr1:150556148-150556684:-
Coord C1 exon
chr1:150556608-150556684
Coord A exon
chr1:150556218-150556607
Coord C2 exon
chr1:150556148-150556217
Length
390 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TAGAATCATCACCCCCACAGACT
3' ss Score
5.22
Exon sequences
Seq C1 exon
GACCCAGGGGGATCCACAGCCCAGTTCCCATTGATGATGGACCGGCCCCCAGGGCCACGAAGTGCTGCGGGTCAGAG
Seq A exon
GTGAGAGATCGGGAAATTCCAGGGTGATAATACCTTCCTCCTCCCACACCGTGTCCTTAGCCTATAGAAGCTCCCACCAGAACCTAAGATCCCCCCAAGCCCTCTCAGCTTCCTCACTCCTTCCACGAGGGGAGGGGCTAGGCCCTGGACTTCCCCCTGTTTGGCTTGCTCACTGCTCTGAGTAGGGGTATGGAGGGCCGAACAGAGACGGAAGTGGAAGGGGAGGCAGCTGGGTGCTCACCCAGGTAGTTGGAGCTAGGCCGGAGCTGGGCAATCTGGAGCCGCAAGGCTCCCGCTGGAATCCACAAGATCTTCTGATAGCCCAGGGGGCCCCCTCGGTCAGTGAGGTTCCCCGAAACAAGGCGACAGGTAGAATCATCACCCCCACAG
Seq C2 exon
ACTCCACAGCCATCAGGACGCCTGCCAGAGCCAAGGATCCCATCACAGCCGGGGCTCTGGAGAGAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000237781:ENST00000442435:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains