HsaINT0004363 @ hg38
Intron Retention
Gene
ENSG00000143382 | ADAMTSL4
Description
ADAMTS like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr1:150556162-150556793:+
Coord C1 exon
chr1:150556162-150556366
Coord A exon
chr1:150556367-150556620
Coord C2 exon
chr1:150556621-150556793
Length
254 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTCTCACCTCTGACCCGCAGCAC
3' ss Score
7.49
Exon sequences
Seq C1 exon
AGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCTGATGGCTGTGGAGTCTGTGGGGGTGATGATTCTACCTGTCGCCTTGTTTCGGGGAACCTCACTGACCGAGGGGGCCCCCTGGGCTATCAGAAGATCTTGTGGATTCCAGCGGGAGCCTTGCGGCTCCAGATTGCCCAGCTCCGGCCTAGCTCCAACTACCTGG
Seq A exon
GTGAGCACCCAGCTGCCTCCCCTTCCACTTCCGTCTCTGTTCGGCCCTCCATACCCCTACTCAGAGCAGTGAGCAAGCCAAACAGGGGGAAGTCCAGGGCCTAGCCCCTCCCCTCGTGGAAGGAGTGAGGAAGCTGAGAGGGCTTGGGGGGATCTTAGGTTCTGGTGGGAGCTTCTATAGGCTAAGGACACGGTGTGGGAGGAGGAAGGTATTATCACCCTGGAATTTCCCGATCTCTCACCTCTGACCCGCAG
Seq C2 exon
CACTTCGTGGCCCTGGGGGCCGGTCCATCATCAATGGGAACTGGGCTGTGGATCCCCCTGGGTCCTACAGGGCCGGCGGGACCGTCTTTCGATATAACCGTCCTCCCAGGGAGGAGGGCAAAGGGGAGAGTCTGTCGGCTGAAGGCCCCACCACCCAGCCTGTGGATGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143382:ENST00000369038:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.603
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTGTCGCCTTGTTTCGG
R:
ATAGACATCCACAGGCTGGGT
Band lengths:
305-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development