BtaINT0014398 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003604 | ADAMTSL4
Description
Bos taurus ADAMTS-like 4 (ADAMTSL4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101061]
Coordinates
chr3:20191331-20191975:-
Coord C1 exon
chr3:20191771-20191975
Coord A exon
chr3:20191504-20191770
Coord C2 exon
chr3:20191331-20191503
Length
267 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCCTGATCTGCCACCTCCAGCAC
3' ss Score
5.68
Exon sequences
Seq C1 exon
AGCCCTGGCTGTGATGGCATCCTTGGCTCTGGCCGGCATCCAGATGGCTGTGGCGTCTGTGGGGGTGATGATTCTACCTGTCGCCTCGTCTTGGGGAACCTCACTGAGCGGGGTGGCCCTCTGGGTTATCAGAAGATCTTGTCCATTCCTGCCGGGGCCTCCCGACTCCAGATTGCCCAGCTCCGGCCCAGCTCCAACTACCTTG
Seq A exon
GTGAGTCCCTGAGCTCCCTGAGTCTTAGGTCCCCACTCCTTCCCTGGTCAGTTGGTTCTGCCCGGCACACCCCCATTCAGCACAGGAAACAAGCCACCAGTGAAGTCAGGGCTCCCCTCCCTCTCCTTCCCAGGTGGGGGCAATGAGGAAGCCACAGGAGCATGGGGAGGTGTGCAGGTTGGGGGGATATGTGGGTTCCCTGCCAGTAGGGAAGTGAGAGGAGAGGAGGACAGGATGACCTCACATGTCCTGATCTGCCACCTCCAG
Seq C2 exon
CACTTCGAGGTCCTGGGGGCCGGTCCATCATCAATGGAAACTGGGCTGTGGATCCCCCTGGGTCCTATACCGCCGGCGGGACTGTCTTCCGGTACAACCGTCCTCCCCGGGAGGAGGGCGCTGGGGAGAGCCTGTCCGCAGAAGGCCCCACCACCCAGCCCGTGGATGTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003604:ENSBTAT00000004686:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.655
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGTGATGGCATCCTTG
R:
GTTGTACCGGAAGACAGTCCC
Band lengths:
299-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]