MmuINT0011580 @ mm10
Intron Retention
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95681260-95681856:-
Coord C1 exon
chr3:95681652-95681856
Coord A exon
chr3:95681433-95681651
Coord C2 exon
chr3:95681260-95681432
Length
219 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
CTCAGACATCTGTCTTTCAGCAC
3' ss Score
6.46
Exon sequences
Seq C1 exon
AGCCCTGGCTGTGATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCTGCGGAGTCTGCGGGGGTGATGGTTCTACCTGCCGCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATCCCTGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCGACCCAGTTCCAATTACCTCG
Seq A exon
GTAAGAAAGAGGACCTCGGTCCTATGCCCCAGTCTATCCTTTTTCTTTGATCTGCCTACTACACACCCTCTTCAGCCGAACGAAAGGCAAAACAGGAAGAGGCTGGAGCCTTCTCATAAACCGGATGGAGGGTGAGGAGGGTGGATGGTCGAGGTCTCTGGGCACAAAGGCTTCAGAAGAGAGTACCACTATCACTCAGCTCAGACATCTGTCTTTCAG
Seq C2 exon
CACTCCGAGGGCCTGGGGGCCGCTCCATTATCAATGGGAACTGGGCTGTGGATCCTCCAGGGTCCTATACAGCCATTGGGACTGTCTTCCAGTATAACCGTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTCAGCAGAAGGCCCTACCACTCAGCCTGTGGACGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850:ENSMUST00000117782:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.534
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGTTTCGGGAAATCTCA
R:
ATAGACGTCCACAGGCTGAGT
Band lengths:
296-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types