DreINT0000453 @ danRer10
Intron Retention
Gene
ENSDARG00000063407 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr16:1275707-1279588:+
Coord C1 exon
chr16:1275707-1275913
Coord A exon
chr16:1275914-1279399
Coord C2 exon
chr16:1279400-1279588
Length
3486 bp
Sequences
Splice sites
5' ss Seq
CTGGGTATG
5' ss Score
-10.52
3' ss Seq
TGTGTGTGTGTGTGTGTGCAGCT
3' ss Score
-12.97
Exon sequences
Seq C1 exon
CAGAGCGAGGGTTGTGACGGTGTGCTGGGCTCCGGGCTGGTCCGGGACCGCTGTGGTGTGTGTGGCGGTGAGGACGGCACCTGTGAACGGGTCAGCGGGAGCTTCATGAACACCAGTGTTCCTCTGGGATACCACAAAATCCTGGACATTCCACCCGGAGCCACGGCTATCAACATCACGGAGAGACGGGCCAGCCCAAACTACCTG
Seq A exon
GGTATGAACTCTGTGTGCGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGAAGTTTCAGCTCTAAATAGCGCACAGAAAATGTTTTATAACTCTCTGAAACAGACCCTTTAATGCTGTGTTCACACCGGCAAGGCAACGTGCGGATAAATCACGCTATTCACGTGTAAATAGACTCGTGAACATTTTGAGTTGACTCACTTCATTCGCACGTCAAAATATGCTTCATTCTCGCGTCAAGTCCGCTTCATTCGCATGTAAAATCCTCTTCATTCGCACGTCAAAACCGCTTCATTCGCGCATCAAGTTCGCTTCATTTGCACGTCAAAACTGCTTCATTCGCGCATCAAGTTCGCTTCATTTGCACGTCAAAATCCGCTTTATTCTCACGTCAAATCTGCTTCATTTGTGCTTCAAGTCCGCCTCATTCGCATGTCAAATCCGCTTCATTCGCGCACCAAAATCTGCTTCATTCGCATGTTTGCACATTTATATGCGCTTTGTTTGCACGTCAAGTCCGCTTCATTTACTCGTCAAAATTCGCTTTATTTGTGCATCAAGTCTGAGTCATTTGCACGTCGAGTCCGTTTCATTCGCATGTTAAAATACACTTCATTTGCGCATCAAATCTATTTCATTTGCACAACAAGACTGCTTCATTTGCGCGTCAAAATCTGCTGCATTCGCACATCAAATCTGCTTTACAATAGATGCAGAGTCATGTCATGGACAGGGCGCGTCATTGGTTAACGCGGCGCGAATGTCCACTGAAGTTCAGATTCGAAATATGCGTTACGTGCGTAAACGCATCGATCGCTCAAAACACTCAACTTGTGCTGCTGTATTTGCGCCACCACCTTCGCGTGTATTGCACCGCAGGATGTCTATTCGCGTCTTTGCATTGACTTAACATGTAAATCCCTCTTGATGCTTCTTCTGCGCCTGGTTTGAACGCAGCATTAGGCTTTGATCCTAATTGTGGTGTTTTGATGACTGTCGCTTTAAATGCAAATGAGATTTTTCAGAAGAGGGCGGAGCTGCAGATGCCTGTGTGTCAGCATAGTGGCATATTCAAAAACAAGACTAACCTCCTATGCTAATGAGGAAGAGATGGGCACTAGTAGGCGGGGCTTCTCCCTCTGATGACACGCACAAAGGGAGAATGTCAATCACTGAGCTAAACCCAACCAATAGTGTTTTCAGAAGCAGACATAAGATGTTTTGTGGTGTTTATTTAGCGTCATGCAAAGAAATGCACGATAATAATCTTTTACTAGTCAATATTGTGTGCTTATAAATATCATTAGTGTGAAAAGGAACTAAAGTCATAGTGGTCATACTGCCCCCTAGTGTCCATTTACCTTCAAACCCCAGTCAAACGTGTGTTAAAATATTAGCCTGAAGCACATTTCTTCACTGAGTCTGTGTTGGTAGTTTTGGCTGTGGTGAATCACACTGCTAATGTGGTGCTCATCCTAATATTAGCCTGAACAGGACTCAGGAATGCACACAAATTCACGGCTGTTGATCTTATAAGCGCAGCTCTGGAGGATCTCTGGGCTGGATTAGGTAATGCAGGCATGTTTTCCTTTAGTAGTGAACATGTCTGTGTTTGTTTCTGCATTTGGCTGTGTGTTCCGGAGCCCCGGAGGCAGATCGCTGTATTAGACAAAACACTGACAGAGTTACACGACAGATCAGCCTTTTCTGTCTCTCTGACATCCTTTTATTGGCTTTTATTTTACTGTAGTTTGTTCTGTGTGTGTGTGTGTGTGTGTGTGTCTGCCGTAGTTTTGTTGATCAGAGGTTGTTCCCTCAGAGCTCAGGATGTGTTGTTAACTTTTACGCTGAGGGTTTTTATTTATTTTAATAAATGATTTAAACTAGTGCTGGGCAAAAATATAACCACAATTAATCACATCCAAAATAAAGGATAGTTTTGACATAATATATGTGTGTATTTATACTAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGCTAGATAGATAGATAGATAGATAGATAGATGTTAGTAAAATAATACAGTTAATTATCTATTTTTTCCATTTATGTTCATCATGAGGTTAGTCAAATGAACGAATTTCTTTTAATAATAATTAAATTATAAATTAAATGAACAAATTAAATCAACTTAATTGTTTCTAATTAAGAAAAATTGTTGCATGGAAATGTTATTAAATTAAGAAAATGTGTTGCATAGTTTGAAATTATTATTGAACTAGGGAAAATTTGCATAATTTTAATTATTTAATTATCACATAATTTTATTATTAAATTAAGAAAAATTGTTGCATAAATTGAATTTTATTATTAAAAAAAGAAACACTGTCGTATAAATTAAATTTTATTGTTAAAATAAGAAACATTGTTGCATAAATTTAATTTTATTATTCAAATAAGAAGCAATGTTGCATAATTAAATTGTTATTATTAAAATAAGAAATATTATTGCATAATTTAAATTTTATTATTAAGTAAAATTGTTGTATAATTTAAATTGTATTATTAAATTAAGAAACATTTTTGTGTAAATAAAATTTTATTGTTAAATTAGGAAACATTGTTGCATAAATTAAATTTTATTATTCAAATAAGAAGCAATGTTGCATAAATTTAATTGTATTATTAAATTAAGAAACATTGTCATGTAAATTAAATTTTATTGTTAAATTAGGAAACATTGTTGCATAAATTAAATTTTATTCAAATAAGAAGCAATGTTGCATAATTAAAATGTTATTATTAAAATAGGAAACATTATTGCATAAATTAATTTTTATTATAAAAATAAGAAACATTGTTGCATAAATTAAATTTGATTATAAAAATAAGATTCCCAGAGATGGGTTGCAGCTGGAAGGGCATGCGTTGCTAAAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCTGGATTAAAACGGGACTAAGCTGACAAGAAAATGAATGAATGAATGAATAAAAATAAGAAACATTGTTGCATAAATTAAATTTGATTATAAAAATAAGAAGCAATGTTGCGTGGTTTTAATTGTAGTCTCAGTATTAGTCTAGTTGTCAGTATTGAAGGTCTTTTTCAGTCTCTATGAATGTAAAATACATTTTCTCTGTAATTTGAGTTTCTTAATGTCTCTGCATCATCTTTACCTTTACACTGCTGCTAAGAGAGGGAGAATTCCTGCTCGCATGTGGTGTGTGATTATGTAGGAAACTCATAAAAAGATCATCACAAGATCTGTACTGAGATCTGTAATTACACACAGCTAAAAACAGCCTTCCACAAACAAATGATGACTGTCAGAGGACTCCAAAACATGGTCAAACCAGCTCTGCGTGTTGTGACTTTAATCTCATTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCA
Seq C2 exon
GCTCTGCGCAGTGGGACAGGTCAGTCAGTGGTGAACGGCCGCTGGGCTGTGGATCCTCCAGGAGAGTATCAGGCAGGAGGAGCCGCTTTCCTCTACACCCGACCCAAAGCGGAGCCTCAGGAGCCGGGAGAGGACAGAGGAGAGACCCTCACTGCTGCTGGACCCACTACTGCACTGCTGCAGCTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063407:ENSDART00000092627:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.540
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(33.1=58.0)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(51.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]