RnoINT0013682 @ rn6
Intron Retention
Gene
ENSRNOG00000049385 | Adamtsl4
Description
ADAMTS-like 4 [Source:RGD Symbol;Acc:1561012]
Coordinates
chr2:197808314-197808868:-
Coord C1 exon
chr2:197808664-197808868
Coord A exon
chr2:197808487-197808663
Coord C2 exon
chr2:197808314-197808486
Length
177 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
CTCAGATTTCTGTCTTTCAGCAC
3' ss Score
7.89
Exon sequences
Seq C1 exon
AGCCCCGGCTGTGATGGGATCCTTGGCTCTGGCAGGCGTCCGGATGGCTGTGGAGTCTGTGGGGGTGACGGCTCTACCTGCCGTCTCGTTTCGGGGAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATTCCTGCGGGAGCCTCCCATCTTCGCATTTCCCAGTTCCGACCCAGTTCCAATTACCTTG
Seq A exon
GTGAGAACTGGCCCAGGCCATCCTTTTTCTCTGATCTGCCTTCTACACCCTCTTCAGCCGAGCAAAGGGCCAAGCAGGAAGGGGCTGGTGGAGGGTGAGGAAGGTGGGTGGCCTAGGTCCTTATTTCTGGACACAAAGGCTTCGGAAGATCACTCAGCTCAGATTTCTGTCTTTCAG
Seq C2 exon
CACTTCGAGGGCCTGGTGGCCGCTCCATTATCAATGGGAACTGGGCTGTAGATCCTCCAGGATCCTACGCGGCCGTCGGGACCGTCTTCCAGTATAACCGTCCTCCTCGGGAGGAGGGCAAGGGGGAGACTCTGTCAGCAGAAGGCCCTACCACCCAGCCTGTGGATGTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049385:ENSRNOT00000074156:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.483
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(35.3=59.4)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(49.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGGGATCCTTGGCTCT
R:
AGGATCTACAGCCCAGTTCCC
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]