HsaINT1037369 @ hg38
Intron Retention
Gene
ENSG00000283294 | RP11-681B3.4
Description
NA
Coordinates
chr18:14248967-14249485:+
Coord C1 exon
chr18:14248967-14249023
Coord A exon
chr18:14249024-14249431
Coord C2 exon
chr18:14249432-14249485
Length
408 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
TTCTTTATTTTTCTTTCTAGCTG
3' ss Score
10.56
Exon sequences
Seq C1 exon
GTATCAACCTATGTTATCTCCTCCATCAGAAAGCCCATGATATTGACATAAAAGTGG
Seq A exon
GTAGGTGTCCCTTCTGTGTTTTCCAGCAGTGCCCTGCTGTATACATGTCGTGGTATCTATGACTCTATATGGACATTACCTGCCTGTCTGTTTTTTTAGGTTATAGCATATGACTGTTGAGAGGTGGACCACACCATCTTCATCTTGTAATTCCAGTGCTGGTTCTAGTACCTTGGCACATGGCTGTTGATTACATGAATGAAGAATGAAAAAGCTCTGATGTTTAAACACAATTAGAATTAATGCCATGTGTAAATTATTAAATAGTAATTTTGTATTGTAAATGTACATACATATTTCTCATACTTATTAACTCTGATAAAGTTCACAACTCTTTAGTTTTTAAACTCACACTAGTTAACTGAAGTGTTTTAGGTAAAGGACATAATTCTTTATTTTTCTTTCTAG
Seq C2 exon
CTGTTGCTGTGTTGGACACTTGCTCCCATCTATTTTCTTCTCTAGAATCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000283294:ENST00000577614:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains