HsaINT1037733 @ hg38
Intron Retention
Gene
ENSG00000214776 | RP11-726G1.1
Description
NA
Coordinates
chr12:9560110-9560968:+
Coord C1 exon
chr12:9560110-9560189
Coord A exon
chr12:9560190-9560817
Coord C2 exon
chr12:9560818-9560968
Length
628 bp
Sequences
Splice sites
5' ss Seq
ATATGGTGA
5' ss Score
-21.58
3' ss Seq
TTGGTGATTTGTATTACAGACTC
3' ss Score
-14.5
Exon sequences
Seq C1 exon
GTTATCAAAGGCAATTATCTTTCAAAAACTCTGATGGTTCCTATAGTGTGTTTTGGCAGCAGAGTCAGAAAGGAAGCATA
Seq A exon
TGGTGAGACATAAAAATTTTATTTTATATAATATAGGAATTACCTGAGGAGGGCTTGCAAGGAGGTGAAGGAGGATAGAGTTCAGTGGGGATTTAGAAGCAAAGTGGGTTTCAAAGTCAATTTACGGAAGAGAAATAGATAAAACTAAAGATTTAGTGATTCCAATTCTAATGCAACAATGTTCCTTCAGTCTCATGACGATTTGCTTAGCAGTCTGATCCCTCATGACAGCCCCTATACATGCACCGCTGGTTAACTCCACCGAAGAGGGCACGTCTTACTCTGTGCTTCTCAGAGTCCCATATAGATTCGGGAAAGTGAAATTAGAAGGACCCAAAATACCTAATTACATCATTTCTCTCTCCATGTGCAGATAATCTAATGGGCTATATACAACAGGACCTTTGGGTGCAAACATGCTGAAAATTACCTACTCTAATTTCCACTTATTGCTAGTCATAATATTTTCCTGACCCAAAGGAAAGGGCCACTAACAATAAAGATGGTTTACAGTAGATGAGTTGAATGCATCCTTTACTCAAAGGGAACAGTGGTGATGAACCTGTGGAATTGCTGACATTGTCACTTCCTCTTTATCTAATTTTGCTTTGGTGATTTGTATTACAGA
Seq C2 exon
CTCAGTGCTCTTACTTTTAAGACATTGGAGAGAATGAAAAAATATGTATTCATTGATGAAAATGTTCAAAAACAGACCTTAATCTGGCTTTCAAGCCAACAGAAAACAAGCGGCTGCTTTAAGAATGATGGCCAGCTTTTCAACCACGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214776:ENST00000518709:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.2=100)
A:
NA
C2:
PF076789=A2M_comp=PU(2.2=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAATTATCTTTCAAAAACTCTGA
R:
AGGCGTGGTTGAAAAGCTGG
Band lengths:
223-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains