HsaINT1041048 @ hg38
Intron Retention
Gene
ENSG00000141295 | SCRN2
Description
secernin 2 [Source:HGNC Symbol;Acc:HGNC:30381]
Coordinates
chr17:47838270-47838696:-
Coord C1 exon
chr17:47838531-47838696
Coord A exon
chr17:47838451-47838530
Coord C2 exon
chr17:47838270-47838450
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
TTCCATCTGTGCCCCTCTAGGTC
3' ss Score
11.89
Exon sequences
Seq C1 exon
GGGGCATCACGGCAGAGGTGATGATGGGCATCCTCAGAGACAAGGAGAGTGGTATCTGTATGGACTCGGGAGGCTTTCGCACCACGGCCAGCATGGTGTCTGTCCTGCCCCAGGATCCCACGCAGCCCTGCGTGCACTTTCTTACCGCCACGCCAGACCCATCCAG
Seq A exon
GTGGGAAGAATGAGGGTGGGGAAGGCTGGGGAGAAGAGAGGATCTGATATATCTCCGTGCTTCCATCTGTGCCCCTCTAG
Seq C2 exon
GTCTGTGTTCAAACCTTTCATCTTCGGGATGGGGGTGGCCCAGGCCCCCCAGGTGCTGTCCCCCACTTTTGGAGCACAAGACCCTGTTCGGACCCTGCCCCGATTCCAGACTCAGGTAGATCGTCGGCATACCCTCTACCGTGGACACCAGGCAGCCCTGGGGCTGATGGAGAGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141295:ENST00000290216:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(4.0=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCGTGCACTTTCTTACC
R:
GCCGACGATCTACCTGAGTCT
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains