RnoINT0131864 @ rn6
Intron Retention
Gene
ENSRNOG00000010214 | Scrn2
Description
secernin 2 [Source:RGD Symbol;Acc:1307741]
Coordinates
chr10:84970137-84970562:+
Coord C1 exon
chr10:84970137-84970302
Coord A exon
chr10:84970303-84970384
Coord C2 exon
chr10:84970385-84970562
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTCAACCTGTGTCTTAATAGGTC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGAGCATCACAGCAGAGGTGATGATGGACATCCTCAGGAACAAGGAGAGCGGCATCTGCATGGACTCTGGAGGCTTCCGTACCACAGCCAGTATGGTGTCAGTCCTGCCCCAGGATCCCACAAAGCCTTGTGTTCACTTCCTCACTGCCACACCAGACCCATCCAG
Seq A exon
GTGAGGGGTGAAGAGGACATACTGTCAGGGACATGACAGGACATTTTCTGATACTTCAGTCCTTCAACCTGTGTCTTAATAG
Seq C2 exon
GTCGGTATTCAAACCTTTCATCTTTGAAGTGGGGGTGTCCCAGCCCCCCCAGGTGTTGTCCCCCACTTTTGGAGCCCAGGACCCTGTTCGGATCCTCCCCAGATTCCAGACTCAGGTGGACCGTCGACATTCACTGTATCGTGGACACCAGGCAGCCCTGGGGCTGATGGACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010214:ENSRNOT00000013580:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0357710=Peptidase_C69=PD(6.9=23.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATCCCACAAAGCCTTG
R:
ACCTGAGTCTGGAATCTGGGG
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]