HsaINT1041879 @ hg38
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25 member 41 [Source:HGNC Symbol;Acc:HGNC:28533]
Coordinates
chr19:6432049-6433779:-
Coord C1 exon
chr19:6433487-6433779
Coord A exon
chr19:6432205-6433486
Coord C2 exon
chr19:6432049-6432204
Length
1282 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGGCCGGGTCTGCCCTGCAGGTA
3' ss Score
7.83
Exon sequences
Seq C1 exon
AATCCTCCCACTAGACACTCCCGCATGGTAGCTGGAGCAGCAAACAACTGCTTAGGGATTTGAAGCCAGGTGTCCTAACTTCCTCCATGGGCGCTCAGCCTGGGGAACCTCAGAACACTTGCTCTAGGATCCAGACACTGTTTAGGAGGGTCAAGACCTTACTCATCAAAGCCCCGCCTCCCCCCCAACCTCCGCCTCCACCCCCATCCTGGAACCCTGGCTGTACACACGTGTATGGGTACGCGTTTGGCCACATGCATGACAACAACCTTGAACATCTCCCGTCACAGCAG
Seq A exon
GTGAGTTTAGGAAACACCAGTGTCCCGGCACCTCTGGTCAGGACTACAGGGAGAGGCCAGGCTACCCACGCCCTCTACAGGCCCACTCCCCTGCTAGCGGACCTAGAATTCCACCTTGAAGCAGGGTGGGGCAGGGAGGCAGGGCGCGATGGCTCCACACATGTAATCCCAGCACTTTGGGAGGTTGAGGTGGATGGGTCACTTGAGGACAGGAGTTCAAGACCAACCTGGCCAACATGCCGAAACCCTATCTCTACTAAAATTACAAAACTTAGCCAGGCATGGTGGTTGGCGCCTGTAGTACCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACTCAGGAGGTAGAGGTTGCAGTGAGCCCAGATCTCATCACTGCACTCAAGCCAGAGCAACACAGCGAGATTCTGTCTCAAAAAATAAGAATAAATTAAGAGTCTAGATATAGTCCTAATTACATTTGTATTCCTCCTTGGATCCTCCATGAGTAACTTAGAGAGTCTATATTACATTGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCTGCCTCTATTAAAATAATACAAAAATTTGCTCGGCACGTTGGCACTGTAATCCCAGCTACTGGGGAGGCTGAGGCAAGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCACACCATTGTCCCTACTTGGGAAGCTGAGACACGAGAATCGCTTGAACCAGGGGGACAGCGGTTGCAGTGAGCCAAGATCGCACCACTGTACTCCAGCTTGGGCGATAGAGTGAGACTCTGTCTAAAAAAAAACAAAAACAAAACAAAAAAAAACCAGGGGGGAGGGTTGAATCACTTGAGGTCAGGAGTTAGAGACCAGCCTGGCCAACATAGTGAAACCCATCTCTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGGTGTTGTGGTGCATGCCTATAATCCCAGCTACTCAGGAGGCTGCGGCAGGAACTGCTTGAACCTGGGAGGTGGAGGTTGCAACGAGCTGAGATTGTGCCACTGCACTCTAACCTGGGCAGCAGAGCAAGACTCCGTCTCGAAAAAAAAAAATGCAGACTTGGGGGAACAGGGTGGGTCTTTCACCAGGTGGGTGCCCTAGATGTGTGTCTGGGGAAGGTGCCCCAACCTGGCTGAGGATGAGGGAGGGCCGGGTCTGCCCTGCAG
Seq C2 exon
GTACTGGACACAGGAGAGCAGCTGATGGTCCCCGTGGAAGTCCTGGAAGTGGATAACAAGGAGGCCTTGTGGAAGTTTCTACTCTCAGGAGCTATGGCCGGGGCGGTGTCTCGCACGGGCACGGCACCTCTGGACAGAGCCAAGGTGTACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240:ENST00000597558:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=NA C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(35.5=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAGGGATTTGAAGCCAGGT
R:
CGGCCATAGCTCCTGAGAGTA
Band lengths:
344-1626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains