GgaINT0125615 @ galGal4
Intron Retention
Gene
ENSGALG00000005095 | SLC25A25
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr17:4799865-4800891:-
Coord C1 exon
chr17:4800780-4800891
Coord A exon
chr17:4800024-4800779
Coord C2 exon
chr17:4799865-4800023
Length
756 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
ATCCTTCTGTTCTTTTGCAGATC
3' ss Score
12.97
Exon sequences
Seq C1 exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
Seq A exon
GTAGGTTCCTCCACAACAGCTCCTGGTCCTTTCCCCAGGTTCTCAGTGAAAGCCATAACCCCAGGGAGCTGCTATCAGCAGTCTCTATCATTTTCTTCATGGTTCAATAGCTGCCTTGTAGCCCTTGAAGCCCAGTTGCTTCCTGTCCTGTCCCCTTATCATGCCACCCATCACTGGTGCTGCTGCTGAAACCTCTGGCACAGGTGATAACAGCTGTACATTCCCCAAGAGGATGTATGTTGACTTGGCTTGTGCATCTGAGAGCTCGTACCAGTGGCCAGATCCTGCCAGCTTAGAACCTGTTAAGACTGGAAGTGGGTTTGACAGGCAGCCGTCCTTCCTGGTGATATTTCAGTGTGTGCAAATAGCATGTAATGAGATAAAACTGACTGCCAGCTTTGAAGGTTCCAGTGAGGCCCGGCTGTGTCCTTGTGCAGCTGCCTACAGTTGGTCTTTTTTTTAATTCTATTGATACAGTTGATCATTTTGTTCATTACTGTGACCCACAGTGTCGTAATGAAGACAAATGTTTAGCAGTACTCTGCTTCCCAAACAAATCTGCTAAACCTTGGTGAGGTGGTACAGCACTGGCACTTGCAGTGTCCAGACACAGTTGTTAATGGTTACAGATAAGCTGCTGTCACGAAGTACTGGAGATGCTTGTTCCAATACTTAGCACTGATAAAGAGAGGTAAAACCGTAGCAGTTTTGCTAGCTTGAATGAGACATTTCTCAAATCCTTCTGTTCTTTTGCAG
Seq C2 exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095:ENSGALT00000008172:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.4=44.7)
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAAAAATGGGACGATGACA
R:
TGAGCACTTTCAAGCGATCCA
Band lengths:
264-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]