RnoINT0136932 @ rn6
Intron Retention
Gene
ENSRNOG00000014338 | Slc25a25
Description
solute carrier family 25 member 25 [Source:RGD Symbol;Acc:628666]
Coordinates
chr3:11446964-11448343:-
Coord C1 exon
chr3:11448232-11448343
Coord A exon
chr3:11447123-11448231
Coord C2 exon
chr3:11446964-11447122
Length
1109 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TCTGCTTGTCTTCCCCATAGATC
3' ss Score
11.78
Exon sequences
Seq C1 exon
CATGGATAAGAATGGGACAATGACCATCGACTGGAACGAGTGGAGGGACTACCACCTCCTGCACCCTGTGGAGAACATCCCTGAGATCATCCTGTACTGGAAGCACTCGACG
Seq A exon
GTGAGCACTGTCCACTGGGCAGCCATCTTTGTCTGGCATCCTCTCATTCCAGGGCTGGGTGGGGGTTGTGATGATACAGTGAGATGTTGCCTGCCACTCAGTCCTCCTTCCATACAGTGACCAGCCTGAACACTTGACCCTTTGCTAGGTGTTCCTTCCTATCCCCACACGCCCTTACGGTCCACTCCAATTACCTCCCTTCTCCTATGCTGCTGCTTCTCCCAGAAACAGTCTGCCTTACACGGGATGGGGGAAGAAACCTTGTTAAGTATGCCTCCTCCTCCTCTGCATTTCTTTTTTAGTATCATTTCTCTTTATGGCAAAAGTACATGTTCTGGCTGAGGCAGAGGAGCCTCATGAGTTACAGGCCAGCCTAGGCTAGAGTTAAACTCTGAATTTGGGGTTTGGTTTATAAGCATGCCCCGTAGGGCCTGCATACTGGTTTTGTTTGTTTGTTCTGTTCTGATAGCGTGGTGCACATTCAGGAAGACAGATGTGATGTGGTTCTCCAACTAGAAATGTTGGTCTGTCTTAAAAGACTTCTGGTGTTCTAGCTGGGTTGCCCTGCTTTATCTACCTTGCACCCACAGTGCCAAGTCAGGGTTTCTTGGGTGGAAAGTAAGTGGCTGATTCTAGGGTTCAGAACAGCTAGCCTGTCTCTGGCCTACAGCCCAGAGGTCAGCAGAGCTGGCTGGGACCAGTTCCAGAGAAAAGGTGTTACGCAGGCAGTGAGCACCCTGCTTGCTTACGCCTTGCATAACACTGTTCTGCTGGCAATCTGGTTCTGTATCGGGTTGCAAGGTTTGTACCCAGCTTCCCTGATCCTGGTACTGTCTAGCCCTAAAGTCCTTGTGGGAAGTTCTAGGAGCTTCCTTTAAAAGGGCAACCCATCAGCAATGTCACATTCTCCCTGATCGTTACCTGCTCCTTTCTAGACCATGTACAAGAGCTGCAGCCACTGTCGGGGCAAAGGGGGAGTTCCTGCCATCCTCATCATTCGTGTGGCCACTTGAGAGAGTGGAAGGCAGTGACCATGGCCAGGTGGCTAGCACCTTGGCCACGGATGTCGTGAGTAAAGTTGCCTATGTCTCTGCTTGTCTTCCCCATAG
Seq C2 exon
ATCTTCGATGTTGGTGAGAATCTGACAGTCCCAGATGAGTTCACAGTGGAGGAGAGGCAGACAGGGATGTGGTGGAGGCACCTGGTGGCAGGAGGTGGTGCAGGGGCAGTTTCCAGAACCTGCACTGCCCCCCTGGACAGACTGAAGGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014338:ENSRNOT00000020206:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(25.8=44.7)
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAATGACCATCGACTG
R:
TGAGCACCTTCAGTCTGTCCA
Band lengths:
254-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]