HsaINT0151759 @ hg38
Intron Retention
Gene
ENSG00000148339 | SLC25A25
Description
solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
Coordinates
chr9:128102370-128103839:+
Coord C1 exon
chr9:128102370-128102481
Coord A exon
chr9:128102482-128103680
Coord C2 exon
chr9:128103681-128103839
Length
1199 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGTGCCATCTTTCCTCACAGATC
3' ss Score
12.09
Exon sequences
Seq C1 exon
CATGGATAAAAACGGCACGATGACCATTGACTGGAACGAGTGGAGAGACTACCACCTCCTCCACCCCGTGGAAAACATCCCCGAGATCATCCTCTACTGGAAGCATTCCACG
Seq A exon
GTGAGCCCCACGTGCCCAGGGCCCTCATCTGCTCCCAGGGACCCTTAGCCCAGAGTCACCCAGTCGTCCCCATCCCAGAGTGCAGCTGGGGCTTTCCAGCCACCTCCTCTTCCACAGGAGACTGTCCCCTCTTCTGCCAGCCCAGTAGAGCTGTCCGCATGTTCCCCATGTTCTGGCACTCCAGCCAACCTGAACAGCCCCATCGTTCACACACACAGGCTTCCTCTTCCAGGAACACCCTCCGTCCCCACATGCTCCCTGCTCCCTGCTCCTCATGGGCCACTTCAAATACCCCTTCCCATGATGCTGTCTGTTCTCCCAAAGCTGGTATGAGCCTTCCCCCCGGTGGGAGGGGGCTGGGGCAGAAGCTACTCTACAGAGAACACCTAGGCAGAGCTGTGAGGTGTCCCCACGGTCACACATTTGCTGCCCTCTCGCCCCCGTCCACTGTGGTTTCATGTTCAGAAATGTGAGTCTGTGCTGGTCTCTGCCCCGAGCCCTTCATGCTTGGCGTGTCCCTCTCTGAGTCCTGGTGTGCAGTCCTGTCCCTCTGGACCATCCGCTCCAGGAGGGGAGGCCAGAGGCGCTCCTCATCTGCCTCTCGCAGTGCCAGGCCAGGGCTTGTTAGGTGAGATTAAATGGACAGCTCCAGGGGTGGGAGTAGCTGGCCCAGAGCTCTGGCCTTTAGCCCTGGGATCAGAGCAGAGGTGGCTCTGATCAGCCCGGATGTCACCCGGAGAAAGGTTACGCAGGCAGCGAGCCCTCGTGTTTGCTGAGGCGTTGCATAATGTTCTGCCAGCGTGATCTGGTTACACGTGAGATCTCAGACGGCTCTCACCCCGGCCTGATCCCTTCAGCGCAGCCAGCCTGGCAATCTCACACAGGCCTGTGAGCTGTTCTTGCAGTAGCTCCCTGGCAGCATTGGAAAGGGCCGGTGAATGGTTTTCTAACCGGCACCTCCCGGCTGTGTTCAGCTGAGGTTCTATACCTGTGCCTCTCCAGGACCCCAGCAGGGGTGAGAGCTCTGCTACCTTCAGAGTGAAGGGAAAGACCCCAGCCCGCTTCCCACCCAGAGTCCTTGGCCTTCTCCCTGTCCTGTGGTCCCTGGCCTGGAGCCGTGCTAGAGGGTAGACGGCGACAGGTGCCAGCAGCCTTGCCCCAAGGGTCCTGAGTCAGGCTTGTGCCATCTTTCCTCACAG
Seq C2 exon
ATCTTTGATGTGGGTGAGAATCTAACGGTCCCGGATGAGTTCACAGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGACACCTGGTGGCAGGAGGTGGGGCAGGGGCCGTATCCAGAACCTGCACGGCCCCCCTGGACAGGCTCAAGGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148339:ENST00000373066:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(25.8=44.7)
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGATGACCATTGACTG
R:
CATGAGCACCTTGAGCCTGTC
Band lengths:
255-1454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains