GgaINT0125615 @ galGal3
Intron Retention
Gene
ENSGALG00000005095 | F1NYW3_CHICK
Description
NA
Coordinates
chr17:5434869-5435895:-
Coord C1 exon
chr17:5435784-5435895
Coord A exon
chr17:5435028-5435783
Coord C2 exon
chr17:5434869-5435027
Length
756 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
ATCCTTCTGTTCTTTTGCAGATC
3' ss Score
12.97
Exon sequences
Seq C1 exon
CATGGATAAAAATGGGACGATGACAATTGACTGGAACGAGTGGCGAGACTATCACCTGCTGCACCCAGTGGAGAACATTCCTGAGATCATCCTGTACTGGAAGCACTCCACG
Seq A exon
GTAGGTTCCTCCACAACAGCTCCTGGTCCTTTCCCCAGGTTCTCAGTGAAAGCCATAACCCCAGGGAGCTGCTATCAGCAGTCTCTATCATTTTCTTCATGGTTCAATAGCTGCCTTGTAGCCCTTGAAGCCCAGTTGCTTCCTGTCCTGTCCCCTTATCATGCCACCCATCACTGGTGCTGCTGCTGAAACCTCTGGCACAGGTGATAACAGCTGTACATTCCCCAAGAGGATGTATGTTGACTTGGCTTGTGCATCTGAGAGCTCGTACCAGTGGCCAGATCCTGCCAGCTTAGAACCTGTTAAGACTGGAAGTGGGTTTGACAGGCAGCCGTCCTTCCTGGTGATATTTCAGTGTGTGCAAATAGCATGTAATGAGATAAAACTGACTGCCAGCTTTGAAGGTTCCAGTGAGGCCCGGCTGTGTCCTTGTGCAGCTGCCTACAGTTGGTCTTTTTTTTAATTCTATTGATACAGTTGATCATTTTGTTCATTACTGTGACCCACAGTGTCGTAATGAAGACAAATGTTTAGCAGTACTCTGCTTCCCAAACAAATCTGCTAAACCTTGGTGAGGTGGTACAGCACTGGCACTTGCAGTGTCCAGACACAGTTGTTAATGGTTACAGATAAGCTGCTGTCACGAAGTACTGGAGATGCTTGTTCCAATACTTAGCACTGATAAAGAGAGGTAAAACCGTAGCAGTTTTGCTAGCTTGAATGAGACATTTCTCAAATCCTTCTGTTCTTTTGCAG
Seq C2 exon
ATCTTTGATGTAGGAGAGAATCTGACTGTCCCTGATGAGTTCACAGTGGAAGAGAGGCAGACAGGGATGTGGTGGAGACATCTGGTTGCAGGTGGAGGTGCAGGTGCCGTGTCCAGAACCTGTACAGCTCCCTTGGATCGCTTGAAAGTGCTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005095:ENSGALT00000008172:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.4=44.7)
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=51.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAAAAATGGGACGATGACA
R:
TGAGCACTTTCAAGCGATCCA
Band lengths:
264-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]