HsaINT1043212 @ hg38
Intron Retention
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133397164-133398055:+
Coord C1 exon
chr9:133397164-133397294
Coord A exon
chr9:133397295-133397971
Coord C2 exon
chr9:133397972-133398055
Length
677 bp
Sequences
Splice sites
5' ss Seq
TAGGTGATG
5' ss Score
3.49
3' ss Seq
CTGCCTTCCTGTCCCTGCAGAGG
3' ss Score
12.06
Exon sequences
Seq C1 exon
GGACGTGGTGCACATCACCTTCTTGAGAGGCTCCTTCAAGTCCTCGTGCGTCTCTCTGACCCTGCACCGGCAGATGGTGCCTGCGTCCATCACCGACATGCTGTTAGAAGGCAACGTGGCCAGCATTTTAG
Seq A exon
GTGATGCTGGGGACACAAAGGGGGAGCGTGCCCTGAAGCTCCTGTCCATGGCCTTGGCATCCTATTGTTTAGTTCCAGAGGGTTCATTATTTATGCCCCTGGCCTTGCTCCACATGCACGACCAGTGGGTAGGAACAGTTTCCCTCCATCCATCCCTACACACTGCCCAGGACACCGCTCTGCTCAAATATCCTCCATAGCTCCCAACTACCTATAACACAAAGTTCCTCTCCATAGCCTGGCCCCCACCTGTTTTCCCTCCGCTCCTGCTACACAAATCCTCTATGTAGCTCAATGGCCTAGTCACTGCCCACGCCTCCCACAACCCTCTGCTTTTGCTTCCACAGCCTGGGTGGCACACAGTGGTCCCAGGACATCTTCCTCACACAGCACCACTTCCTTCCTGCGTGCTTCTATGTGCCCAGGATGAGCAGAAGTGCGCTCCATCATCTGTGTGCTCCAAGACAGAGACTTGGGTTCTATTAAGGAAAAGTTGCTTGGTCTCAGTGGCCTCATCTGTAAAGTGGGGATGGTAACAGCCCCTCCCTCTCATCCTGAACCTGTGGATCTGAGGAGGGGATGCACACACAGCAGCCAGCCCAGTGTGGTGCCGAGAAACAGAGCCCCGAGGCCCTGGTCCTCAGAAAGGTCCCTCCCCTGCCTTCCTGTCCCTGCAG
Seq C2 exon
AGGTCATGCAGAAATTCTCTGGCTGGCCCGAAGTCCAGCTCAGGGCCATGAAGAGGCTTCTGAAAATGCCTGCAGATCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870:ENST00000371957:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(3.0=17.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTGGTGCACATCAC
R:
TAGCTGATCTGCAGGCATTTTCA
Band lengths:
214-891
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains