MmuINT0071275 @ mm9
Intron Retention
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26802117-26802847:+
Coord C1 exon
chr2:26802117-26802247
Coord A exon
chr2:26802248-26802763
Coord C2 exon
chr2:26802764-26802847
Length
516 bp
Sequences
Splice sites
5' ss Seq
TAGGTGATG
5' ss Score
3.49
3' ss Seq
TCCATTCCTTCTCCCTGCAGATG
3' ss Score
13.7
Exon sequences
Seq C1 exon
GGATGTGATGCAAGTCACCTTCATGAGCAACTCCTTCAAAAGCTCCTCTGTTGCGCTGAATATGCAGCGGCAGAAGGTCCCCATCTTCATCACTGACGTGCTGCTTGAAGGCAACATGGCCAACATCTTAG
Seq A exon
GTGATGGTGGGGATGCCCTGGATAGTGCTGGGAGCTGTGGTGACCGGCCTTGGCACTAGTTTCAGATGCTTGGTGTCTCTCTCCCACAACTTGGTCCTAGACCTGGTGTTTATGCATGATTAGTGAGTGGGAACAGTTTCCAGGTTCCTCCCCTGTACATAATGTATACCCTTGCTTCCAGTAGCCTGGCTCTGCCAATTTTCCCTGTTCTCATTGGTCATATCCCCTGTGTAGTTAAGACCTGCTCACTGCCCATGTTCTCCAGAGTCCTGTGTCCTTTGACTGCACGCCCTAGGCAGCTGGCTGTGTGCTTCCTTTGTGAACGACAGCAGGCACTGTGACTCAGGGATTGGCTCGCAGAGACTTGGGTTTGATTTTCAGTCAGTCTCTTGGACAGAGCACCCTCTGAAAGGTGAGGCTGAGAGCACCGACTTTGTGGCCTGATTGCTGCAAGGCTAGGGTCTGCTCCTCCACGGCTTGGTCCTCAGTTGGGCTCTCCATTCCTTCTCCCTGCAG
Seq C2 exon
ATGTCATGCAGAATTTCTCCAGTCGACCAGAGGTCCAGCTCAGAGCCATTAACAAGTTGTTGACAATGCCAGAGGACCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-Gm711:NM_198628:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(3.0=17.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGATGCAAGTCACCTTCA
R:
TAGCTGGTCCTCTGGCATTGT
Band lengths:
214-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: